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Clinical Microbiology, Department of - a part of Copenhagen University Hospital
  1. 2021
  2. E-pub ahead of print

    Analysis of the organization and expression patterns of the convergent Pseudomonas aeruginosa lasR/rsaL gene pair uncovers mutual influence

    Schinner, S., Preusse, M., Kesthely, C. & Häussler, S., 19 Oct 2021, (E-pub ahead of print) In: Molecular Microbiology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Comparison of 16 Serological SARS-CoV-2 Immunoassays in 16 Clinical Laboratories

    Harritshøj, L. H., Gybel-Brask, M., Afzal, S., Kamstrup, P. R., Jørgensen, C. S., Thomsen, M. K., Hilsted, L., Friis-Hansen, L., Szecsi, P. B., Pedersen, L., Nielsen, L., Hansen, C. B., Garred, P., Korsholm, T-L., Mikkelsen, S., Nielsen, K. O., Møller, B. K., Hansen, A. T., Iversen, K. K., Nielsen, P. B., Hasselbalch, R. B., Fogh, K., Norsk, J. B., Kristensen, J. H., Schønning, K., Kirkby, N. S., Nielsen, A. C. Y., Landsy, L. H., Loftager, M., Holm, D. K., Nilsson, A. C., Sækmose, S. G., Grum-Schwensen, B., Aagaard, B., Jensen, T. G., Nielsen, D. M., Ullum, H. & Dessau, R. B. C., 20 Apr 2021, In: Journal of Clinical Microbiology. 59, 5

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. E-pub ahead of print

    Beta-hemolytic streptococci A, C and G are susceptible to cloxacillin

    Ghathian, K. & Frimodt-Møller, N., 2 Apr 2021, (E-pub ahead of print) In: APMIS - Journal of Pathology, Microbiology and Immunology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Omics-based tracking of Pseudomonas aeruginosa persistence in "eradicated" cystic fibrosis patients.

    Bartell, J. A., Sommer, L. M., Marvig, R. L., Skov, M., Pressler, T., Molin, S. & Johansen, H. K., Apr 2021, In: The European respiratory journal. 57, 4

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. E-pub ahead of print

    Randomised clinical trial: a 12-strain bacterial mixture versus faecal microbiota transplantation versus vancomycin for recurrent Clostridioides difficile infections

    Rode, A. A., Chehri, M., Krogsgaard, L. R., Heno, K. K., Svendsen, A. T., Ribberholt, I., Helms, M., Engberg, J., Schønning, K., Tvede, M., Andersen, C. Ø., Jensen, U. S., Petersen, A. M. & Bytzer, P., 10 Mar 2021, (E-pub ahead of print) In: Alimentary Pharmacology and Therapeutics. 53, 9, p. 999-1009 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. E-pub ahead of print

    Comparable outcomes of short-course and prolonged-course therapy in selected cases of methicillin-susceptible Staphylococcus aureus bacteremia:A pooled cohort study

    Thorlacius-Ussing, L., Sandholdt, H., Nissen, J., Rasmussen, J., Skov, R., Frimodt-Møller, N., Dahl Knudsen, J., Østergaard, C. & Benfield, T., 2 Mar 2021, (E-pub ahead of print) In: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published
  9. Published

    Pharmacological but not physiological GDF15 suppresses feeding and the motivation to exercise

    Klein, A. B., Nicolaisen, T. S., Ørtenblad, N., Gejl, K. D., Jensen, R., Fritzen, A. M., Larsen, E. L., Karstoft, K., Poulsen, H. E., Morville, T., Sahl, R. E., Helge, J. W., Lund, J., Falk, S., Lyngbæk, M., Ellingsgaard, H., Pedersen, B. K., Lu, W., Finan, B., Jørgensen, S. B., Seeley, R. J., Kleinert, M., Kiens, B., Richter, E. A. & Clemmensen, C., 15 Feb 2021, In: Nature Communications. 12, 1, p. 1041

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Assessment of the Risk of Psychiatric Disorders, Use of Psychiatric Hospitals, and Receipt of Psychiatric Medication Among Patients With Lyme Neuroborreliosis in Denmark

    Tetens, M. M., Haahr, R., Dessau, R. B., Krogfelt, K. A., Bodilsen, J., Andersen, N. S., Møller, J. K., Roed, C., Christiansen, C. B., Ellermann-Eriksen, S., Bangsborg, J. M., Hansen, K., Andersen, C. Ø., Lebech, A-M., Obel, N. & Omland, L. H., 1 Feb 2021, In: JAMA Psychiatry. 78, 2, p. 177-186 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. E-pub ahead of print
  12. Published
  13. Published

    Global evolutionary analysis of chronic hepatitis C patients revealed significant effect of baseline viral resistance, including novel non-target sites, for DAA-based treatment and retreatment outcome

    Fahnøe, U., Pedersen, M. S., Sølund, C., Ernst, A., Krarup, H. B., Røge, B. T., Christensen, P. B., Laursen, A. L., Gerstoft, J., Thielsen, P., Madsen, L. G., Pedersen, A. G., Schønning, K., Weis, N. & Bukh, J., Feb 2021, In: Journal of Viral Hepatitis. 28, 2, p. 302-316 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Increased short- and long-term mortality following infections in dementia: a nationwide registry-based cohort study

    Janbek, J., Taudorf, L., Musaeus, C. S., Frimodt-Møller, N., Laursen, T. M. & Waldemar, G., Feb 2021, In: European Journal of Neurology. 28, 2, p. 411-420 10 p., 2.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Repeated introduction and spread of the MRSA clone t304/ST6 in Northern Europe

    Bartels, M. D., Worning, P., Andersen, L. P., Bès, M., Enger, H., Ås, C. G., Hansen, T. A., Holzknecht, B. J., Larssen, K. W., Laurent, F., Mäkitalo, B., Pichon, B., Svartström, O. & Westh, H., Feb 2021, In: Clinical Microbiology and Infection. 27, 2, p. 284.e1-284.e5

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. E-pub ahead of print
  17. Published

    Characteristics and long-term prognosis of Danish patients with varicella zoster virus detected in the cerebrospinal fluid, compared with the background population

    Omland, L. H., Vestergaard, H. T., Dessau, R. B., Bodilsen, J., Andersen, N. S., Christiansen, C. B., Ellermann-Eriksen, S., Nielsen, L., Andersen, C. Ø., Lebech, A-M. & Obel, N., 8 Jan 2021, In: The Journal of infectious diseases.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. E-pub ahead of print
  19. Published

    Azithromycin potentiates avian IgY effect against Pseudomonas aeruginosa in a murine pulmonary infection model

    Thomsen, K., Christophersen, L., Lerche, C. J., Holmgaard, D. B., Calum, H., Høiby, N. & Moser, C., 1 Jan 2021, In: International Journal of Antimicrobial Agents. 57, 1, p. 106213 106213.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    How to: perform antifungal susceptibility testing of microconidia-forming dermatophytes following the new reference EUCAST method E.Def 11.0, exemplified by Trichophyton

    Subcommittee on Antifungal Susceptibility Testing (AFST) of the ESCMID European Committee for Antimicrobial Susceptibility Testing (EUCAST), Jan 2021, In: Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 27, 1, p. 55-60 6 p.

    Research output: Contribution to journalReviewpeer-review

  21. Published

    SARS-CoV-2 infection among patients with haematological disorders: Severity and one-month outcome in 66 Danish patients in a nationwide cohort study

    Glenthøj, A., Jakobsen, L. H., Sengeløv, H., Ahmad, S. A., Qvist, K., Rewes, A., Poulsen, C. B., Overgaard, U. M., Mølle, I., Severinsen, M. T., Strandholdt, C. N., Maibom, J., Kodahl, A. R., Ryg, J., Ravn, P., Johansen, I. S., Helsø, S. N., Jensen-Fangel, S., Kisielewicz, J., Wiese, L., Helleberg, M., Kirk, O., Clausen, M. R. & Frederiksen, H., Jan 2021, In: European Journal of Haematology. 106, 1, p. 72-81 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    The Extracellular Polysaccharide Matrix of Pseudomonas aeruginosa Biofilms Is a Determinant of Polymorphonuclear Leukocyte Responses

    Rybtke, M., Jensen, P. Ø., Nielsen, C. H. & Tolker-Nielsen, T., Jan 2021, In: Infection and Immunity. 89, 1, p. e00631-20

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published
  24. Published

    Evolution of Pseudomonas aeruginosa toward higher fitness under standard laboratory conditions

    Grekov, I., Thöming, J. G., Kordes, A. & Häussler, S., 2021, In: ISME Journal. 15, 4, p. 1165-1177 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Expression of the MexXY Aminoglycoside Efflux Pump and Presence of an Aminoglycoside-Modifying Enzyme in Clinical Pseudomonas aeruginosa Isolates Are Highly Correlated

    Seupt, A., Schniederjans, M., Tomasch, J. & Häussler, S., 2021, In: Antimicrobial Agents and Chemotherapy. 65, 1, e01166-20.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, "Silenusvirus"

    Kyrkou, I., Carstens, A. B., Ellegaard-Jensen, L., Kot, W., Zervas, A., Djurhuus, A. M., Neve, H., Franz, C. M. A. P., Hansen, M. & Hansen, L. H., 2021, In: Scientific Reports. 10, 1, p. 8763

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. E-pub ahead of print
  28. Published

    Olorofim Susceptibility Testing of 1,423 Danish Mold Isolates Obtained in 2018-2019 Confirms Uniform and Broad-Spectrum Activity

    Astvad, K. M. T., Jørgensen, K. M., Hare, R. K., Datcu, R. & Arendrup, M. C., 2021, In: Antimicrobial Agents and Chemotherapy. 65, 1, e01527-20.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. E-pub ahead of print

    Pandemics: past, present, future: That is like choosing between cholera and plague

    Høiby, N., 2021, (E-pub ahead of print) In: APMIS - Journal of Pathology, Microbiology and Immunology.

    Research output: Contribution to journalReviewpeer-review

  30. E-pub ahead of print

    SARS-CoV-2 infection fatality rate among elderly retired Danish blood donors - A cross-sectional study

    Pedersen, O. B., Nissen, J., Dinh, K. M., Schwinn, M., Kaspersen, K. A., Boldsen, J. K., Didriksen, M., Dowsett, J., Sørensen, E., Thørner, L. W., Larsen, M. A. H., Grum-Schwensen, B., Sækmose, S., Paulsen, I. W., Frisk, N. L. S., Brodersen, T., Vestergaard, L. S., Rostgaard, K., Mølbak, K., Skov, R. L., Erikstrup, C., Ullum, H. & Hjalgrim, H., 2021, (E-pub ahead of print) In: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. E-pub ahead of print

    The discovery of bacterial biofilm in patients with muscle invasive bladder cancer

    Nadler, N., Kvich, L., Bjarnsholt, T., Bjerggaard Jensen, J., Gögenur, I. & Azawi, N., 2021, (E-pub ahead of print) In: APMIS - Journal of Pathology, Microbiology and Immunology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. 2020
  33. Published

    Performance and operational feasibility of two diagnostic tests for cryptosporidiosis in children (CRYPTO-POC): a clinical, prospective, diagnostic accuracy study

    Johansen, Ø. H., Abdissa, A., Zangenberg, M., Mekonnen, Z., Eshetu, B., Bjørang, O., Alemu, Y., Sharew, B., Langeland, N., Robertson, L. J. & Hanevik, K., 3 Dec 2020, In: The Lancet Infectious Diseases.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Antibiotic susceptibility of cystic fibrosis lung microbiome members in a multispecies biofilm

    Vandeplassche, E., Sass, A., Ostyn, L., Burmølle, M., Kragh, K. N., Bjarnsholt, T., Coenye, T. & Crabbé, A., Dec 2020, In: Biofilm. 2, p. 100031

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    Bacterial aggregate size determines phagocytosis efficiency of polymorphonuclear leukocytes

    Alhede, M., Lorenz, M., Fritz, B. G., Jensen, P. Ø., Ring, H. C., Bay, L. & Bjarnsholt, T., Dec 2020, In: Medical Microbiology and Immunology. 209, 6, p. 669-680 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Bacterial persisters in long-term infection: Emergence and fitness in a complex host environment

    Bartell, J. A., Cameron, D. R., Mojsoska, B., Haagensen, J. A. J., Pressler, T., Sommer, L. M., Lewis, K., Molin, S. & Johansen, H. K., Dec 2020, In: PLoS pathogens. 16, 12, p. e1009112

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    CRHP Finder, a webtool for the detection of clarithromycin resistance in Helicobacter pylori from whole-genome sequencing data

    Yusibova, M., Hasman, H., Clausen, P. T. L. C., Imkamp, F., Wagner, K. & Andersen, L. P., Dec 2020, In: Helicobacter. 25, 6, p. e12752

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published
  39. Published

    Genetic determinants of Pseudomonas aeruginosa fitness during biofilm growth

    Schinner, S., Engelhardt, F., Preusse, M., Thöming, J. G., Tomasch, J. & Häussler, S., Dec 2020, In: Biofilm. 2, p. 100023

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published
  41. Published

    Improving antibiotic treatment of bacterial biofilm by hyperbaric oxygen therapy: Not just hot air

    Jensen, P. Ø., Møller, S. A., Lerche, C. J., Moser, C., Bjarnsholt, T., Ciofu, O., Faurholt-Jepsen, D., Høiby, N. & Kolpen, M., Dec 2020, In: Biofilm. 1, p. 100008

    Research output: Contribution to journalReviewpeer-review

  42. Published

    Targeting bioenergetics is key to counteracting the drug-tolerant state of biofilm-grown bacteria

    Donnert, M., Elsheikh, S., Arce-Rodriguez, A., Pawar, V., Braubach, P., Jonigk, D., Haverich, A., Weiss, S., Müsken, M. & Häussler, S., Dec 2020, In: PLoS pathogens. 16, 12, p. e1009126

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    High rates of multi-drug resistant gram-negative organisms associated with surgical site infections in a teaching hospital in Ghana

    Bediako-Bowan, A. A. A., Kurtzhals, J. A. L., Mølbak, K., Labi, A-K., Owusu, E. & Newman, M. J., 25 Nov 2020, In: BMC Infectious Diseases. 20, 1, p. 890

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Horizontally acquired papGII-containing pathogenicity islands underlie the emergence of invasive uropathogenic Escherichia coli lineages

    Biggel, M., Xavier, B. B., Johnson, J. R., Nielsen, K. L., Frimodt-Møller, N., Matheeussen, V., Goossens, H., Moons, P. & Van Puyvelde, S., 24 Nov 2020, In: Nature Communications. 11, 1, p. 5968

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. E-pub ahead of print

    Light-guided nudging and data-driven performance feedback improve hand hygiene compliance among nurses and doctors

    Iversen, A-M., Stangerup, M., From-Hansen, M., Hansen, R., Sode, L. P., Kostadinov, K., Hansen, M. B., Calum, H., Ellermann-Eriksen, S. & Knudsen, J. D., 10 Nov 2020, (E-pub ahead of print) In: American Journal Of Infection Control.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Introduction of a Comprehensive Diagnostic and Interdisciplinary Management Approach in Haematological Patients with Mucormycosis: A Pre and Post-Intervention Analysis

    Risum, M., Helweg-Larsen, J., Petersen, S. L., Kampmann, P., Overgaard, U. M., El Fassi, D., Nielsen, O. J., Brabrand, M., Rubek, N., Munksgaard, L., Severinsen, M. T., Nielsen, B., Gertsen, J. B., Gylfe, Å., Hjort, U., Vourtsi, A., Hare, R. K. & Arendrup, M. C., 8 Nov 2020, In: Journal of fungi (Basel, Switzerland). 6, 4, p. 1-16

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Myocardial Impairment and Acute Respiratory Distress Syndrome in Hospitalized Patients With COVID-19: The ECHOVID-19 Study

    Skaarup, K. G., Lassen, M. C. H., Lind, J. N., Alhakak, A. S., Sengeløv, M., Nielsen, A. B., Espersen, C., Hauser, R., Schöps, L. B., Holt, E., Johansen, N. D., Modin, D., Sharma, S., Graff, C., Bundgaard, H., Hassager, C., Jabbari, R., Lebech, A-M., Kirk, O., Bødtger, U., Lindholm, M. G., Joseph, G., Wiese, L., Schiødt, F. V., Kristiansen, O. P., Walsted, E. S., Nielsen, O. W., Madsen, B. L., Tønder, N., Benfield, T. L., Jeschke, K. N., Ulrik, C. S., Knop, F., Pallisgaard, J., Lamberts, M., Sivapalan, P., Gislason, G., Solomon, S. D., Iversen, K., Jensen, J. U. S., Schou, M. & Biering-Sørensen, T., 1 Nov 2020, In: JACC. Cardiovascular imaging. 13, 11, p. 2474-2476 3 p.

    Research output: Contribution to journalLetterpeer-review

  48. Published

    Application of digital image analysis on histological images of a murine embryoid body model for monitoring endothelial differentiation

    Mousavi, N., Raft, M. B., Truelsen, S. L. B., Timmermans, V., Thastrup, J. & Heegaard, S., Nov 2020, In: Pathology, research and practice. 216, 11, p. 153225 153225.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Changes in Lyme neuroborreliosis incidence in Denmark, 1996 to 2015

    Tetens, M. M., Haahr, R., Dessau, R. B., Krogfelt, K. A., Bodilsen, J., Andersen, N. S., Møller, J. K., Roed, C., Christiansen, C. B., Ellermann-Eriksen, S., Bangsborg, J. M., Hansen, K., Benfield, T. L., Andersen, C. Ø., Obel, N., Omland, L. H. & Lebech, A-M., Nov 2020, In: Ticks and Tick-borne Diseases. 11, 6, p. 101549 101549.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    How to interpret MICs of antifungal compounds according to the revised clinical breakpoints v. 10.0 European committee on antimicrobial susceptibility testing (EUCAST)

    Subcommittee on Antifungal Susceptibility Testing (AFST) of the ESCMID European Committee for Antimicrobial Susceptibility Testing (EUCAST), Nov 2020, In: Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 26, 11, p. 1464-1472 9 p.

    Research output: Contribution to journalReviewpeer-review

  51. Published

    In vivo demonstration of Pseudomonas aeruginosa biofilms as independent pharmacological microcompartments

    Christophersen, L., Schwartz, F. A., Lerche, C. J., Svanekjær, T., Kragh, K. N., Laulund, A. S., Thomsen, K., Henneberg, K-Å., Sams, T., Høiby, N. & Moser, C., Nov 2020, In: Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society. 19, 6, p. 996-1003 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Meropenem to Children With Febrile Neutropenia Induces Monoresistant Pseudomonas aeruginosa

    Mønster, M. B., Vissing, N. H., Schrøder, H., Grosen, D., Rosthøj, S., Frimodt-Møller, N., Wang, M., Schønheyder, H. C., Schmiegelow, K., Justesen, U. S. & Nygaard, U., Nov 2020, In: Journal of Pediatric Hematology/Oncology. 42, 8, p. e783-e787

    Research output: Contribution to journalJournal articleResearchpeer-review

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