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The Capital Region of Denmark - a part of Copenhagen University Hospital
  1. 2022
  2. E-pub ahead of print

    SpikeSeq: A rapid, cost efficient and simple method to identify SARS-CoV-2 variants of concern by Sanger sequencing part of the spike protein gene

    Jørgensen, T. S., Pedersen, M. S., Blin, K., Kuntke, F., Salling, H. K., Marvig, R. L., Michaelsen, T. Y., Albertsen, M. & Larsen, H., 8 Nov 2022, (E-pub ahead of print) In: Journal of Virological Methods. p. 114648

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published
  4. Published

    Polymicrobial infections can select against Pseudomonas aeruginosa mutators because of quorum-sensing trade-offs

    Luján, A. M., Paterson, S., Hesse, E., Sommer, L. M., Marvig, R. L., Sharma, M. D., Alseth, E. O., Ciofu, O., Smania, A. M., Molin, S., Johansen, H. K. & Buckling, A., Jul 2022, In: Nature ecology & evolution. 6, 7, p. 979-988 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Introduction and transmission of SARS-CoV-2 lineage B.1.1.7, Alpha variant, in Denmark

    Danish COVID-19 Genome Consortium (DCGC), 4 May 2022, In: Genome Medicine. 14, 1, p. 1-13 13 p., 47.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Fatal JC-virus Granular Cerebellar Neuronopathy in a Patient Diagnosed with ALPS and Hypogammaglobulinemia

    Helweg-Larsen, J., Rasmussen, M., Marquart, H. V., Kondziella, D., Marvig, R. L., Rosenstierne, M. W., Bay, J. T., Ryder, L. P., Gjerdrum, L. M. R., Bangsgaard, R., Gideon, P., Sellebjerg, F. T., Fomsgaard, A. & PIDVIR Consortium, May 2022, In: Journal of Clinical Immunology. 42, 4, p. 869-872 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published
  8. Published

    Molecular epidemiology of the SARS-CoV-2 variant Omicron BA.2 sub-lineage in Denmark, 29 November 2021 to 2 January 2022

    Fonager, J., Bennedbæk, M., Bager, P., Wohlfahrt, J., Ellegaard, K. M., Ingham, A. C., Edslev, S. M., Stegger, M., Sieber, R. N., Lassauniere, R., Fomsgaard, A., Lillebaek, T., Svarrer, C. W., Møller, F. T., Møller, C. H., Legarth, R., Sydenham, T. V., Steinke, K., Paulsen, S. J., Castruita, J. A. S. & 15 others, Schneider, U. V., Schouw, C. H., Nielsen, X. C., Overvad, M., Nielsen, R. T., Marvig, R. L., Pedersen, M. S., Nielsen, L., Nilsson, L. L., Bybjerg-Grauholm, J., Tarpgaard, I. H., Ebsen, T. S., Lam, J. U. H., Gunalan, V. & Rasmussen, M., 10 Mar 2022, In: Eurosurveillance. 27, 10, p. 1-7 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published
  10. Published
  11. 2021
  12. Published

    Human immunotypes impose selection on viral genotypes through viral epitope specificity

    Gabrielaite, M., Bennedbæk, M., Zucco, A. G., Ekenberg, C., Murray, D. D., Kan, V. L., Touloumi, G., Vandekerckhove, L., Turner, D., Neaton, J., Lane, H. C., Safo, S., Arenas-Pinto, A., Polizzotto, M. N., Günthard, H. F., Lundgren, J. D., Marvig, R. L. & INSIGHT START trial group, 15 Dec 2021, In: The Journal of infectious diseases. 224, 12, p. 2053-2063 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Microbiome Compositions and Resistome Levels after Antibiotic Treatment of Critically Ill Patients: An Observational Cohort Study

    Nielsen, K. L., Olsen, M. H., Pallejá, A., Ebdrup, S. R., Sørensen, N., Lukjancenko, O., Marvig, R. L., Møller, K., Frimodt-Møller, N. & Hertz, F. B., 9 Dec 2021, In: Microorganisms. 9, 12, 2542.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    A Comparison of Tools for Copy-Number Variation Detection in Germline Whole Exome and Whole Genome Sequencing Data

    Gabrielaite, M., Torp, M. H., Rasmussen, M. S., Andreu-Sánchez, S., Vieira, F. G., Pedersen, C. B., Kinalis, S., Madsen, M. B., Kodama, M., Demircan, G. S., Simonyan, A., Yde, C. W., Olsen, L. R., Marvig, R. L., Østrup, O., Rossing, M., Nielsen, F. C., Winther, O. & Bagger, F. O., 1 Dec 2021, In: Cancers. 13, 24, 21 p., 6283.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    A major outbreak of covid-19 at a residential care home

    Andersen, C. Ø., Buch, I., Castruita, J. A. S., Jakobsen, N. G., Jensen, C. B., Westh, H., Marvig, R. L., Pedersen, M. S., Schønning, K. & Pinholt, M., 1 Oct 2021, In: Danish Medical Journal. 68, 10, A03210227.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Achromobacter spp. genetic adaptation in cystic fibrosis

    Gabrielaite, M., Nielsen, F. C., Johansen, H. K. & Marvig, R. L., Jul 2021, In: Microbial genomics. 7, 7, 13 p., 000582.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Genomic and Phenotypic Evolution of Achromobacter xylosoxidans during Chronic Airway Infections of Patients with Cystic Fibrosis

    Khademi, S. M. H., Gabrielaite, M., Paulsson, M., Knulst, M., Touriki, E., Marvig, R. L. & Påhlman, L. I., 29 Jun 2021, In: mSystems. p. e0052321 e00523-21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Pseudomonas aeruginosa adaptation and evolution in patients with cystic fibrosis

    Rossi, E., La Rosa, R., Bartell, J. A., Marvig, R. L., Haagensen, J. A. J., Sommer, L. M., Molin, S. & Johansen, H. K., May 2021, In: Nature Reviews. Microbiology. 19, 5, p. 331-342 12 p.

    Research output: Contribution to journalReviewResearchpeer-review

  19. Published

    Transmitted HIV-1 drug resistance in a large international cohort using next-generation sequencing: results from the Strategic Timing of Antiretroviral Treatment (START) study

    Baxter, J. D., Dunn, D., Tostevin, A., Marvig, R. L., Bennedbaek, M., Cozzi-Lepri, A., Sharma, S., Kozal, M. J., Gompels, M., Pinto, A. N., Lundgren, J. & INSIGHT START Study Group, May 2021, In: HIV Medicine. 22, 5, p. 360-371 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Omics-based tracking of Pseudomonas aeruginosa persistence in "eradicated" cystic fibrosis patients.

    Bartell, J. A., Sommer, L. M., Marvig, R. L., Skov, M., Pressler, T., Molin, S. & Johansen, H. K., Apr 2021, In: The European respiratory journal. 57, 4, 2000512.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Transmission and Antibiotic Resistance of Achromobacter in Cystic Fibrosis

    Gabrielaite, M., Bartell, J. A., Nørskov-Lauritsen, N., Pressler, T., Nielsen, F. C., Johansen, H. K. & Marvig, R. L., 19 Mar 2021, In: Journal of Clinical Microbiology. 59, 4, 12 p., e02911-20.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published
  23. Published

    Phylogenetic analysis of HIV-1 shows frequent cross-country transmission and local population expansions

    Bennedbæk, M., Zhukova, A., Tang, M-H. E., Bennet, J., Munderi, P., Ruxrungtham, K., Gisslen, M., Worobey, M., Lundgren, J. D. & Marvig, R. L., 2021, In: Virus evolution. 7, 2, p. veab055 A1347.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. 2020
  25. Published

    Nationwide germline whole genome sequencing of 198 consecutive pediatric cancer patients reveals a high incidence of cancer prone syndromes

    Byrjalsen, A., Hansen, T. V. O., Stoltze, U. K., Mehrjouy, M. M., Barnkob, N. M., Hjalgrim, L. L., Mathiasen, R., Lautrup, C. K., Gregersen, P. A., Hasle, H., Wehner, P. S., Tuckuviene, R., Sackett, P. W., Laspiur, A. O., Rossing, M., Marvig, R. L., Tommerup, N., Olsen, T. E., Scheie, D., Gupta, R. & 3 others, Gerdes, A-M., Schmiegelow, K. & Wadt, K., 17 Dec 2020, In: Plos Genetics. 16, 12, p. e1009231 e1009231.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published
  27. Published

    Gene Loss and Acquisition in Lineages of Pseudomonas aeruginosa Evolving in Cystic Fibrosis Patient Airways

    Gabrielaite, M., Johansen, H. K., Molin, S., Nielsen, F. C. & Marvig, R. L., 27 Oct 2020, In: mBio. 11, 5, p. e02359-20

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Oxacillinase-181 Carbapenemase-Producing Klebsiella pneumoniae in Neonatal Intensive Care Unit, Ghana, 2017-2019

    Labi, A-K., Nielsen, K. L., Marvig, R. L., Bjerrum, S., Enweronu-Laryea, C., Bennedbæk, M., Newman, M. J., Ayibor, P. K., Andersen, L. P. & Kurtzhals, J. A. L., Sep 2020, In: Emerging Infectious Diseases . 26, 9, p. 2235-2238 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    GenAPI: a tool for gene absence-presence identification in fragmented bacterial genome sequences

    Gabrielaite, M. & Marvig, R. L., 20 Jul 2020, In: BMC Bioinformatics. 21, 1, p. 320

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Hypermutator Pseudomonas aeruginosa Exploits Multiple Genetic Pathways To Develop Multidrug Resistance during Long-Term Infections in the Airways of Cystic Fibrosis Patients

    Colque, C. A., Albarracín Orio, A. G., Feliziani, S., Marvig, R. L., Tobares, A. R., Johansen, H. K., Molin, S. & Smania, A. M., 21 Apr 2020, In: Antimicrobial Agents and Chemotherapy. 64, 5

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    A snapshot of diversity: Intraclonal variation of Escherichia coli clones as commensals and pathogens

    Stegger, M., Leihof, R. F., Baig, S., Sieber, R. N., Thingholm, K. R., Marvig, R. L., Frimodt-Møller, N. & Nielsen, K. L., Apr 2020, In: International journal of medical microbiology : IJMM. 310, 3, p. 151401

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    High Carriage Rates of Multidrug-Resistant Gram-Negative Bacteria in Neonatal Intensive Care Units From Ghana

    Labi, A-K., Bjerrum, S., Enweronu-Laryea, C. C., Ayibor, P. K., Nielsen, K. L., Marvig, R. L., Newman, M. J., Andersen, L. P. & Kurtzhals, J. A. L., Apr 2020, In: Open Forum Infectious Diseases. 7, 4, p. ofaa109

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Genetic relationship between bacteria isolated from intraoperative air samples and surgical site infections at a major teaching hospital in Ghana

    Stauning, M. A., Bediako-Bowan, A., Bjerrum, S., Andersen, L. P., Andreu-Sánchez, S., Labi, A-K., Kurtzhals, J. A. L., Marvig, R. L. & Opintan, J. A., Mar 2020, In: The Journal of hospital infection. 104, 3, p. 309-320 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Variant in ERAP1 promoter region is associated with low expression in a patient with a Behçet-like MHC-I-opathy

    Dimopoulou, C., Lundgren, J. D., Sundal, J., Ullum, H., Aukrust, P., Nielsen, F. C. & Marvig, R. L., Mar 2020, In: Human Genetics. 65, 3, p. 325-335 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published
  36. Published

    Primary ciliary dyskinesia patients have the same P. aeruginosa clone in sinuses and lungs

    Arndal, E., Johansen, H. K., Haagensen, J. A. J., Bartell, J. A., Marvig, R. L., Alanin, M., Aanæs, K., Høiby, N., Nielsen, K. G., Backer, V. & von Buchwald, C., 2020, In: European Respiratory Journal. 55, 1, p. e1901472

    Research output: Contribution to journalLetterResearchpeer-review

  37. 2019
  38. Published

    Filamentous bacteriophages are associated with chronic Pseudomonas lung infections and antibiotic resistance in cystic fibrosis

    Burgener, E. B., Sweere, J. M., Bach, M. S., Secor, P. R., Haddock, N., Jennings, L. K., Marvig, R. L., Johansen, H. K., Rossi, E., Cao, X., Tian, L., Nedelec, L., Molin, S., Bollyky, P. L. & Milla, C. E., 17 Apr 2019, In: Science translational medicine. 11, 488, p. eaau9748

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. 2018
  40. Published

    Privatisation rescues function following loss of cooperation

    Andersen, S. B., Ghoul, M., Marvig, R. L., Lee, Z-B., Molin, S., Johansen, H. K. & Griffin, A. S., 18 Dec 2018, In: eLife. 7, p. pii: e38594

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa

    Granato, E. T., Ziegenhain, C., Marvig, R. L. & Kümmerli, R., Dec 2018, In: ISME Journal. 12, 12, p. 2907-2918 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. 2017
  43. Published

    Genome-wide-analyses of Listeria monocytogenes from food-processing plants reveals clonal diversity and dates the emergence of persisting sequence types

    Knudsen, G. M., Nielsen, J. B., Marvig, R. L., Ng, Y., Worning, P., Westh, H. & Gram, L., 1 Aug 2017, In: Environmental Microbiology. 9, 4, p. 428-440

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. 2016
  45. Published

    The evolution of antimicrobial peptide resistance in Pseudomonas aeruginosa is shaped by strong epistatic interactions

    Jochumsen, N., Marvig, R. L., Damkiær, S., Jensen, R. L., Paulander, W., Molin, S., Jelsbak, L. & Folkesson, A., 3 Oct 2016, In: Nature Communications. 7, p. 13002

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. Published

    Is genotyping of single isolates sufficient for population structure analysis of Pseudomonas aeruginosa in cystic fibrosis airways?

    Sommer, L. M., Marvig, R. L., Luján, A., Koza, A., Pressler, T., Molin, S. & Johansen, H. K., 9 Aug 2016, In: BMC Genomics. 17, p. 589

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Bacterial evolution in PCD and CF patients follows the same mutational steps

    Sommer, L. M., Alanin, M. C., Marvig, R. L., Nielsen, K. G., Høiby, N., von Buchwald, C., Molin, S. & Johansen, H. K., 28 Jun 2016, In: Scientific Reports. 6, p. 28732

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Antibiotic combination therapy can select for broad-spectrum multidrug resistance in Pseudomonas aeruginosa

    Vestergaard, M., Paulander, W. E. A., Marvig, R. L., Clasen, J. B., Jochumsen, N., Molin, S., Jelsbak, L., Ingmer, H. & Folkesson, A., 2016, In: International Journal of Antimicrobial Agents. 47, 1, p. 48-55

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. 2015
  50. Published

    Long-term social dynamics drive loss of function in pathogenic bacteria

    Andersen, S. B., Marvig, R. L., Molin, S., Krogh Johansen, H. & Griffin, A. S., 25 Aug 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 34, p. 10756-61 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Dyb metagenomsekventering til diagnostik af invasiv mikrobiel infektion

    Marvig, R. L., 2015, In: Best Practice. 3. årgang, nr. 7, p. 20-22

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. Published

    Evolutionary insight from whole-genome sequencing of Pseudomonas aeruginosa from cystic fibrosis patients

    Marvig, R. L., Sommer, L. M., Jelsbak, L., Molin, S. & Johansen, H. K., 2015, In: Future Microbiology. 10, 4, p. 599-611 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  53. Published

    Within-host microevolution of Pseudomonas aeruginosa in Italian cystic fibrosis patients

    Marvig, R. L., Dolce, D., Sommer, L. M., Petersen, B., Ciofu, O., Campana, S., Molin, S., Taccetti, G. & Johansen, H. K., 2015, In: BMC Microbiology. 15, p. 218

    Research output: Contribution to journalJournal articleResearchpeer-review

ID: 46006575