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The Capital Region of Denmark - a part of Copenhagen University Hospital
  1. 2021
  2. Published

    Fish Oil Supplementation in Pregnancy and Neurodevelopment in Childhood-A Randomized Clinical Trial

    Sass, L., Bjarnadóttir, E., Stokholm, J., Chawes, B., Vinding, R. K., Mora-Jensen, A-R. C., Thorsen, J., Noergaard, S., Ebdrup, B. H., Jepsen, J. R. M., Fagerlund, B., Bønnelykke, K., Lauritzen, L. & Bisgaard, H., Jul 2021, In: Child Development. 92, 4, p. 1624-1635 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Large-scale association analyses identify host factors influencing human gut microbiome composition

    Kurilshikov, A., Medina-Gomez, C., Bacigalupe, R., Radjabzadeh, D., Wang, J., Demirkan, A., Le Roy, C. I., Raygoza Garay, J. A., Finnicum, C. T., Liu, X., Zhernakova, D. V., Bonder, M. J., Hansen, T. H., Frost, F., Rühlemann, M. C., Turpin, W., Moon, J-Y., Kim, H-N., Lüll, K., Barkan, E., Shah, S. A., Fornage, M., Szopinska-Tokov, J., Wallen, Z. D., Borisevich, D., Agreus, L., Andreasson, A., Bang, C., Bedrani, L., Bell, J. T., Bisgaard, H., Boehnke, M., Boomsma, D. I., Burk, R. D., Claringbould, A., Croitoru, K., Davies, G. E., van Duijn, C. M., Duijts, L., Falony, G., Fu, J., van der Graaf, A., Hansen, T., Homuth, G., Hughes, D. A., Ijzerman, R. G., Jackson, M. A., Jaddoe, V. W. V., Joossens, M., Jørgensen, T., Keszthelyi, D., Knight, R., Laakso, M., Laudes, M., Launer, L. J., Lieb, W., Lusis, A. J., Masclee, A. A. M., Moll, H. A., Mujagic, Z., Qibin, Q., Rothschild, D., Shin, H., Sørensen, S. J., Steves, C. J., Thorsen, J., Timpson, N. J., Tito, R. Y., Vieira-Silva, S., Völker, U., Völzke, H., Võsa, U., Wade, K. H., Walter, S., Watanabe, K., Weiss, S., Weiss, F. U., Weissbrod, O., Westra, H-J., Willemsen, G., Payami, H., Jonkers, D. M. A. E., Arias Vasquez, A., de Geus, E. J. C., Meyer, K. A., Stokholm, J., Segal, E., Org, E., Wijmenga, C., Kim, H-L., Kaplan, R. C., Spector, T. D., Uitterlinden, A. G., Rivadeneira, F., Franke, A., Lerch, M. M., Franke, L., Sanna, S., D'Amato, M., Pedersen, O., Paterson, A. D., Kraaij, R., Raes, J. & Zhernakova, A., Feb 2021, In: Nature Genetics. 53, 2, p. 156-165 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Modeling transfer of vaginal microbiota from mother to infant in early life

    Mortensen, M. S., Rasmussen, M. A., Stokholm, J., Brejnrod, A. D., Balle, C., Thorsen, J., Krogfelt, K. A., Bisgaard, H. & Sørensen, S. J., 15 Jan 2021, In: eLife. 10, p. 1-19 19 p., e57051.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. 2020
  6. E-pub ahead of print

    Urbanized microbiota in infants, immune constitution, and later risk of atopic diseases

    Lehtimäki, J., Thorsen, J., Rasmussen, M. A., Hjelmsø, M., Shah, S., Mortensen, M. S., Trivedi, U., Vestergaard, G., Bønnelykke, K., Chawes, B. L., Brix, S., Sørensen, S. J., Bisgaard, H. & Stokholm, J., 15 Dec 2020, (E-pub ahead of print) In: The Journal of allergy and clinical immunology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published
  8. Published

    Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial

    Hjelmsø, M. H., Shah, S. A., Thorsen, J., Rasmussen, M., Vestergaard, G., Mortensen, M. S., Brejnrod, A., Brix, S., Chawes, B., Bønnelykke, K., Sørensen, S. J., Stokholm, J. & Bisgaard, H., 1 Dec 2020, In: Nature Communications. 11, 1, p. 426 426.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age

    Morin, A., McKennan, C. G., Pedersen, C-E. T., Stokholm, J., Chawes, B. L., Malby Schoos, A-M., Naughton, K. A., Thorsen, J., Mortensen, M. S., Vercelli, D., Trivedi, U., Sørensen, S. J., Bisgaard, H., Nicolae, D. L., Bønnelykke, K. & Ober, C., Dec 2020, In: The Journal of allergy and clinical immunology. 146, 6, p. 1358-1366 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma

    Stokholm, J., Thorsen, J., Blaser, M. J., Rasmussen, M. A., Hjelmsø, M., Shah, S., Christensen, E. D., Chawes, B. L., Bønnelykke, K., Brix, S., Mortensen, M. S., Brejnrod, A., Vestergaard, G., Trivedi, U., Sørensen, S. J. & Bisgaard, H., 11 Nov 2020, In: Science translational medicine. 12, 569, p. aax9929 14 p., eaax9929.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Clinically-suspected cast nephropathy: A retrospective, national, real-world study

    Szabo, A. G., Thorsen, J., Iversen, K. F., Hansen, C. T., Teodorescu, E. M., Pedersen, S. B., Flaeng, S. B., Strandholdt, C., Frederiksen, M., Vase, M. Ø., Frølund, U. C., Krustrup, D., Plesner, T. & Vangsted, A. J., Nov 2020, In: American Journal of Hematology. 95, 11, p. 1352-1360 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Ecological succession in the vaginal microbiota during pregnancy and birth

    Rasmussen, M. A., Thorsen, J., Dominguez-Bello, M. G., Blaser, M. J., Mortensen, M. S., Brejnrod, A. D., Shah, S. A., Hjelmsø, M. H., Lehtimäki, J., Trivedi, U., Bisgaard, H., Sørensen, S. J. & Stokholm, J., Sep 2020, In: ISME Journal. 14, 9, p. 2325-2335 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Early life bacterial airway colonization, local immune mediator response and risk of otitis media

    Christensen, E. D., Thorsen, J., Stokholm, J., Pedersen, T. M., Brix, S., Krogfelt, K. A., Schjørring, S., Chawes, B., Bønnelykke, K., Bisgaard, H. & Rasmussen, M. A., Aug 2020, In: Journal of Medical Microbiology. 69, 8, p. 1124-1131 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Predictive Metagenomic Analysis Reveals a Role of Cutaneous Dysbiosis in the Development of Hidradenitis Suppurativa

    Ring, H. C., Thorsen, J., Jørgensen, A. H., Bay, L., Bjarnsholt, T., Fuursted, K., Thomsen, S. F. & Jemec, G. B., Jul 2020, In: The Journal of investigative dermatology. 140, 7, p. 1473-1476 4 p.

    Research output: Contribution to journalLetterResearchpeer-review

  15. Published
  16. Published

    Universal Dermal Microbiome in Human Skin

    Bay, L., Barnes, C. J., Fritz, B. G., Thorsen, J., Restrup, M. E. M., Rasmussen, L., Sørensen, J. K., Hesselvig, A. B., Odgaard, A., Hansen, A. J. & Bjarnsholt, T., 11 Feb 2020, In: mBio. 11, 1

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. 2019
  18. Published

    Infant airway microbiota and topical immune perturbations in the origins of childhood asthma

    Thorsen, J., Rasmussen, M. A., Waage, J., Mortensen, M., Brejnrod, A., Bønnelykke, K., Chawes, B. L., Brix, S., Sørensen, S. J., Stokholm, J. & Bisgaard, H., 1 Nov 2019, In: Nature Communications. 10, 1, p. 5001 8 p., 5001.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published
  20. Published

    A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples

    Deng, L., Silins, R., Castro-Mejía, J. L., Kot, W., Jessen, L., Thorsen, J., Shah, S., Stokholm, J., Bisgaard, H., Moineau, S. & Nielsen, D. S., 20 Jul 2019, In: Viruses. 11, 7, 10 p., 667.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Levels of Systemic Low-grade Inflammation in Pregnant Mothers and Their Offspring are Correlated

    Fink, N. R., Chawes, B., Bønnelykke, K., Thorsen, J., Stokholm, J., Rasmussen, M. A., Brix, S. & Bisgaard, H., 28 Feb 2019, In: Scientific Reports. 9, 1, p. 3043 3043.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published
  23. 2018
  24. Published

    Short- and long-term impacts of azithromycin treatment on the gut microbiota in children: A double-blind, randomized, placebo-controlled trial

    Wei, S., Mortensen, M. S., Stokholm, J., Brejnrod, A. D., Thorsen, J., Rasmussen, M. A., Trivedi, U., Bisgaard, H. & Sørensen, S. J., Dec 2018, In: EBioMedicine. 38, p. 265-272 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published
  26. Published

    Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis

    23andMe Research Team, Aug 2018, In: Nature Genetics. 50, 8, p. 1072-1080 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    The Airway Microbiota in Childhood Asthma

    Thorsen, J. J. I., 6 Jul 2018

    Research output: Book/ReportPh.D. thesis

  28. Published

    Neonates colonized with pathogenic bacteria in the airways have a low-grade systemic inflammation

    Rahman Fink, N., Chawes, B. L., Thorsen, J., Stokholm, J., Krogfelt, K., Schjørring, S., Kragh, M., Bønnelykke, K., Brix, S. & Bisgaard, H., 9 Apr 2018, In: Allergy. 73, 11, p. 2150-2159 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    CDHR3 Genetics and Rhinovirus C Respiratory Illnesses

    Bønnelykke, K., Coleman, A. T., Evans, M. D., Thorsen, J., Waage, J., Vissing, N. H., Carlsson, C. J., Stokholm, J., Chawes, B. L., Jessen, L. E., Fischer, T. K., Bochkov, Y. A., Ober, C., Lemanske, R. F., Jackson, D. J., Gern, J. E. & Bisgaard, H., 1 Mar 2018, In: American Journal of Respiratory and Critical Care Medicine. 197, 5, p. 589-594 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    Publisher Correction: Maturation of the gut microbiome and risk of asthma in childhood

    Stokholm, J., Blaser, M. J., Thorsen, J., Rasmussen, M. A., Waage, J., Vinding, R. K., Schoos, A-M. M., Kunøe, A., Fink, N. R., Chawes, B. L., Bønnelykke, K., Brejnrod, A. D., Mortensen, M. S., Al-Soud, W. A., Sørensen, S. J. & Bisgaard, H., 13 Feb 2018, In: Nature Communications. 9, 1, 704.

    Research output: Contribution to journalJournal articleCommunication

  31. Published

    Maturation of the gut microbiome and risk of asthma in childhood

    Stokholm, J., Blaser, M. J., Thorsen, J., Rasmussen, M. A., Waage, J., Vinding, R. K., Schoos, A-M. M., Kunøe, A., Fink, N. R., Chawes, B. L., Bønnelykke, K., Brejnrod, A. D., Mortensen, M. S., Al-Soud, W. A., Sørensen, S. J. & Bisgaard, H., 10 Jan 2018, In: Nature Communications. 9, 1, p. 1-10 10 p., 141.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. 2017
  33. Published
  34. Published

    Antibiotics in Pregnancy Increase Children's Risk of Otitis Media and Ventilation Tubes

    Pedersen, T. M., Stokholm, J., Thorsen, J., Mora-Jensen, A-R. C. & Bisgaard, H., Apr 2017, In: The Journal of pediatrics. 183, p. 153-158 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. 2016
  36. Published

    The developing hypopharyngeal microbiota in early life

    Mortensen, M. S., Brejnrod, A. D., Roggenbuck, M., Abu Al-Soud, W. M. A. F., Balle, C., Krogfelt, K. A., Stokholm, J., Thorsen, J., Waage, J., Rasmussen, M. A., Bisgaard, H. & Sørensen, S. J., 30 Dec 2016, In: Microbiome. 4, 1, p. 70 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published
  38. Published

    Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies

    Thorsen, J., Brejnrod, A., Mortensen, M., Rasmussen, M. A., Stokholm, J., Al-Soud, W. A., Sørensen, S., Bisgaard, H. & Waage, J., 25 Nov 2016, In: Microbiome. 4, 1, p. 62

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Cesarean section changes neonatal gut colonization

    Stokholm, J., Thorsen, J., Chawes, B. L., Schjørring, S., Krogfelt, K. A., Bønnelykke, K. & Bisgaard, H., 1 Apr 2016, In: The Journal of allergy and clinical immunology. 138, 3, p. 881-889 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

ID: 48218845