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Clinical Microbiology, Department of - a part of Copenhagen University Hospital
  1. 2018
  2. Published

    Biofilm and motility in response to environmental and host-related signals in Gram negative opportunistic pathogens

    Rossi, E., Paroni, M. & Landini, P., 28 Aug 2018, In : Journal of Applied Microbiology. p. 1587-1602 16 p.

    Research output: Contribution to journalReviewResearchpeer-review

  3. Published

    High-resolution in situ transcriptomics of Pseudomonas aeruginosa unveils genotype independent patho-phenotypes in cystic fibrosis lungs

    Rossi, E., Falcone, M., Molin, S. & Johansen, H. K., 27 Aug 2018, In : Nature Communications. 9, 1, p. 3459

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Mutations causing low level antibiotic resistance ensure bacterial survival in antibiotic-treated hosts

    Frimodt-Møller, J., Rossi, E., Haagensen, J. A. J., Falcone, M., Molin, S. & Johansen, H. K., 21 Aug 2018, In : Scientific Reports. 8, 1, p. 12512

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Cross sectional study of multiresistant bacteria in Danish emergency departments: prevalence, patterns and risk factors for colonization (AB-RED project)

    Mogensen, C. B., Skjøt-Arkil, H., Lassen, A. T., Johansen, I. S., Chen, M., Petersen, P., Andersen, K. V., Ellermann-Eriksen, S., Møller, J. M., Ludwig, M., Fuglsang-Damgaard, D., Nielsen, F., Petersen, D. B., Jensen, U. S. & Rosenvinge, F. S., 20 Aug 2018, In : BMC Emergency Medicine. 18, 1, p. 25

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published
  7. Published

    EUCAST Determination of Olorofim (F901318) Susceptibility of Mold Species, Method Validation, and MICs

    Jørgensen, K. M., Astvad, K. M. T., Hare, R. K. & Arendrup, M. C., Aug 2018, In : Antimicrobial Agents and Chemotherapy. 62, 8, p. e00487-18

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Evolution of Antibiotic Resistance in Biofilm and Planktonic Pseudomonas aeruginosa Populations Exposed to Subinhibitory Levels of Ciprofloxacin

    Ahmed, M. N., Porse, A., Sommer, M. O. A., Høiby, N. & Ciofu, O., Aug 2018, In : Antimicrobial Agents and Chemotherapy. 62, 8, p. e00320-18

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Implants induce a new niche for microbiomes

    Jakobsen, T. H., Eickhardt, S. R., Gheorghe, A. G., Stenqvist, C., Sønderholm, M., Stavnsberg, C., Jensen, P. Ø., Odgaard, A., Whiteley, M., Moser, C., Hvolris, J., Hougen, H. P. & Bjarnsholt, T., Aug 2018, In : APMIS - Journal of Pathology, Microbiology and Immunology. 126, 8, p. 685-692 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Sequence Type 410 Is Causing New International High-Risk Clones

    Roer, L., Overballe-Petersen, S., Hansen, F., Schønning, K., Wang, M., Røder, B. L., Hansen, D. S., Justesen, U. S., Andersen, L. P., Fulgsang-Damgaard, D., Hopkins, K. L., Woodford, N., Falgenhauer, L., Chakraborty, T., Samuelsen, Ø., Sjöström, K., Johannesen, T. B., Ng, K., Nielsen, J., Ethelberg, S., Stegger, M., Hammerum, A. M. & Hasman, H., 1 Jul 2018, In : mSphere. 3, 4, e00337-18.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Traffic flow and microbial air contamination in operating rooms at a major teaching hospital in Ghana

    Stauning, M. T., Bediako-Bowan, A., Andersen, L. P., Opintan, J. A., Labi, A. K., Kurtzhals, J. A. L. & Bjerrum, S., 1 Jul 2018, In : Journal of Hospital Infection. 99, 3, p. 263-270 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Complete Genome Sequence of a Vancomycin-Resistant Sequence Type 203 Enterococcus faecium Strain with vanA Belonging to Complex Type 859

    Hoffmann, M., Yao, K., Allard, M., Sanchez, M., Andersen, L. P., Hasman, H. & Hammerum, A. M., Jul 2018, In : Microbiology Resource Announcements. 7, 2, p. e00815-18

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Methodologies for in vitro and in vivo evaluation of efficacy of antifungal and antibiofilm agents and surface coatings against fungal biofilms

    Van Dijck, P., Sjollema, J., Cammue, B. P., Lagrou, K., Berman, J., d'Enfert, C., Andes, D. R., Arendrup, M. C., Brakhage, A. A., Calderone, R., Cantón, E., Coenye, T., Cos, P., Cowen, L. E., Edgerton, M., Espinel-Ingroff, A., Filler, S. G., Ghannoum, M., Gow, N. A. R., Haas, H., Jabra-Rizk, M. A., Johnson, E. M., Lockhart, S. R., Lopez-Ribot, J. L., Maertens, J., Munro, C. A., Nett, J. E., Nobile, C. J., Pfaller, M. A., Ramage, G., Sanglard, D., Sanguinetti, M., Spriet, I., Verweij, P. E., Warris, A., Wauters, J., Yeaman, M. R., Zaat, S. A. J. & Thevissen, K., 14 Jun 2018, In : Microbial Cell Factories. 5, 7, p. 300-326 27 p.

    Research output: Contribution to journalReviewResearchpeer-review

  14. Published

    Detection of Glycan Shedding in the Blood: New Class of Multiple Sclerosis Biomarkers?

    DellaValle, B., Manresa-Arraut, A., Hasseldam, H., Stensballe, A., Rungby, J., Larsen, A. & Hempel, C., 4 Jun 2018, In : Frontiers in Immunology. 9, p. 1254

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published
  16. Published
  17. Published

    Pharmacokinetics and Pharmacodynamics of Fosfomycin and Its Activity against Extended-Spectrum-β-Lactamase-, Plasmid-Mediated AmpC-, and Carbapenemase-Producing Escherichia coli in a Murine Urinary Tract Infection Model

    Zykov, I. N., Samuelsen, Ø., Jakobsen, L., Småbrekke, L., Andersson, D. I., Sundsfjord, A. & Frimodt-Møller, N., Jun 2018, In : Antimicrobial Agents and Chemotherapy. 62, 6, p. e02560-17

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Should standardized susceptibility testing for microbial biofilms be introduced in clinical practice?

    Coenye, T., Goeres, D., Van Bambeke, F. & Bjarnsholt, T., Jun 2018, In : Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 24, 6, p. 570-572 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published
  20. Published

    Long term survival, health, social functioning, and education in patients with European Lyme neuroborreliosis: nationwide population based cohort study

    Obel, N., Dessau, R. B., Krogfelt, K. A., Bodilsen, J., Andersen, N. S., Møller, J. K., Roed, C., Omland, L. H., Christiansen, C. B., Ellermann-Eriksen, S., Bangsborg, J. M., Hansen, K., Benfield, T. L., Rothman, K. J., Sørensen, H. T., Andersen, C. Ø. & Lebech, A-M., 30 May 2018, In : BMJ. 361, p. k1998

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Pseudomonas aeruginosa transcriptome during human infection

    Cornforth, D. M., Dees, J. L., Ibberson, C. B., Huse, H. K., Mathiesen, I. H., Kirketerp-Møller, K., Wolcott, R. D., Rumbaugh, K. P., Bjarnsholt, T. & Whiteley, M., 29 May 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 22, p. E5125-E5134

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published
  23. Published

    Use of diagnostic tests and the appropriateness of the treatment decision in patients with suspected urinary tract infection in primary care in Denmark - Observational study

    Córdoba, G., Holm, A., Sørensen, T. M., Siersma, V., Sandholdt, H., Makela, M., Frimodt-Møller, N. & Bjerrum, L., 16 May 2018, In : BMC Family Practice. 19, 1, p. 65

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Invasive candidiasis

    Pappas, P. G., Lionakis, M. S., Arendrup, M. C., Ostrosky-Zeichner, L. & Kullberg, B. J., 11 May 2018, In : Nature reviews. Disease primers. 4, p. 18026

    Research output: Contribution to journalReviewResearchpeer-review

  25. Published

    Bacterial Aggregates Establish at the Edges of Acute Epidermal Wounds

    Bay, L., Kragh, K. N., Eickhardt, S. R., Poulsen, S. S., Gjerdrum, L. M. R., Ghathian, K., Calum, H., Ågren, M. S. & Bjarnsholt, T., 1 May 2018, In : Advances in Wound Care. 7, 4, p. 105-113

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published
  27. Published
  28. Published

    Bacterial biofilms: a possible mechanism for chronic infection in patients with lumbar disc herniation - a prospective proof-of-concept study using fluorescence in situ hybridization

    Ohrt-Nissen, S., Fritz, B. G., Walbom, J., Kragh, K. N., Bjarnsholt, T., Dahl, B. & Manniche, C., May 2018, In : APMIS - Journal of Pathology, Microbiology and Immunology. 126, 5, p. 440-447 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published
  30. Published

    IgG avidity to Pseudomonas aeruginosa over the course of chronic lung biofilm infection in cystic fibrosis

    Mauch, R. M., Nørregaard, L. L., Ciofu, O., Levy, C. E. & Høiby, N., May 2018, In : Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society. 17, 3, p. 356-359 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    Influence of periodontal treatment on subgingival and salivary microbiotas

    Belstrøm, D., Grande, M. A., Sembler-Møller, M. L., Kirkby, N., Cotton, S. L., Paster, B. J. & Holmstrup, P., May 2018, In : Journal of Periodontology. 89, 5, p. 531-539 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Behandling af infektioner forårsaget af vancomycinresistente enterokokker

    Lund, L. C., Holzknecht, B. J. & Justesen, U. S., 16 Apr 2018, In : Ugeskrift for Laeger. 180, 16

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Interleukin-26 (IL-26) is a novel anti-microbial peptide produced by T cells in response to staphylococcal enterotoxin

    Woetmann, A., Alhede, M., Dabelsteen, S., Bjarnsholt, T., Rybtke, M., Nastasi, C., Krejsgaard, T., Andersen, M. H., Bonefeld, C. M., Geisler, C., Givskov, M. & Odum, N., 13 Apr 2018, In : Oncotarget. 9, 28, p. 19481-19489 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Convergent Metabolic Specialization through Distinct Evolutionary Paths in Pseudomonas aeruginosa

    La Rosa, R., Johansen, H. K. & Molin, S., 10 Apr 2018, In : mBio. 9, 2, p. e00269-18

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published
  36. Published

    Polyphasic data support the splitting of Aspergillus candidus into two species; proposal of Aspergillus dobrogensis sp. nov

    Hubka, V., Nováková, A., Jurjević, Ž., Sklenář, F., Frisvad, J. C., Houbraken, J., Arendrup, M. C., Jørgensen, K. M., Siqueira, J. P. Z., Gené, J. & Kolařík, M., Apr 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 4, p. 995-1011 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Recommendations for enterovirus diagnostics and characterisation within and beyond Europe

    Harvala, H., Broberg, E., Benschop, K., Berginc, N., Ladhani, S., Susi, P., Christiansen, C., McKenna, J., Allen, D., Makiello, P., McAllister, G., Carmen, M., Zakikhany, K., Dyrdak, R., Nielsen, X., Madsen, T., Paul, J., Moore, C., von Eije, K., Piralla, A., Carlier, M., Vanoverschelde, L., Poelman, R., Anton, A., López-Labrador, F. X., Pellegrinelli, L., Keeren, K., Maier, M., Cassidy, H., Derdas, S., Savolainen-Kopra, C., Diedrich, S., Nordbø, S., Buesa, J., Bailly, J-L., Baldanti, F., MacAdam, A., Mirand, A., Dudman, S., Schuffenecker, I., Kadambari, S., Neyts, J., Griffiths, M. J., Richter, J., Margaretto, C., Govind, S., Morley, U., Adams, O., Krokstad, S., Dean, J., Pons-Salort, M., Prochazka, B., Cabrerizo, M., Majumdar, M., Nebbia, G., Wiewel, M., Cottrell, S., Coyle, P., Martin, J., Moore, C., Midgley, S., Horby, P., Wolthers, K., Simmonds, P., Niesters, H. & Fischer, T. K., Apr 2018, In : Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology. 101, p. 11-17 7 p.

    Research output: Contribution to journalReviewResearchpeer-review

  38. Published

    Schistosomiasis Presenting as Recurring Sigmoid Volvulus in a Danish Man With an Inconspicuous Travel History-A Case Report

    Krog, A. D., Axelsson, J. M., Bondgaard, A-L. R. & Kurtzhals, J. A., Apr 2018, In : Open Forum Infectious Diseases. 5, 4, p. ofy057

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Update from a twelve-year nationwide fungaemia surveillance: increasing intrinsic and acquired resistance causes concern

    Astvad, K. M. T., Johansen, H. K., Røder, B. L., Rosenvinge, F. S., Knudsen, J. D., Lemming, L., Schønheyder, H. C., Hare, R. K., Kristensen, L., Nielsen, L., Gertsen, J. B., Dzajic, E., Pedersen, M., Østergård, C., Olesen, B., Søndergaard, T. S. & Arendrup, M. C., Apr 2018, In : Journal of Clinical Microbiology. 56, 4, p. pii: e01564-17

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Matrix Metalloproteinase Mediated Type I Collagen Degradation is an Independent Predictor of Increased Risk of Acute Myocardial Infarction in Postmenopausal Women

    Bertelsen, D. M., Neergaard, J. S., Bager, C. L., Nielsen, S. H., Secher, N. H., Svendsen, J. H., Bihlet, A. R., Andersen, J. R., Karsdal, M. A., Christiansen, C. & Nielsen, H. B., 29 Mar 2018, In : Scientific Reports. 8, 1, p. 5371

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Mechanisms of humoral immune response against Pseudomonas aeruginosa biofilm infection in cystic fibrosis

    Mauch, R. M., Jensen, P. Ø., Moser, C., Levy, C. E. & Høiby, N., Mar 2018, In : Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society. 17, 2, p. 143-152 10 p.

    Research output: Contribution to journalReviewResearchpeer-review

  42. Published

    Recurrent terbinafine resistant Trichophyton rubrum infection in a child with congenital ichthyosis

    Schøsler, L., Andersen, L. K., Arendrup, M. C. & Sommerlund, M., Mar 2018, In : Pediatric Dermatology. 35, 2, p. 259-260 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published
  44. Published

    Complete Nucleotide Sequence of an Escherichia coli Sequence Type 410 Strain Carrying blaNDM-5 on an IncF Multidrug Resistance Plasmid and blaOXA-181 on an IncX3 Plasmid

    Overballe-Petersen, S., Roer, L., Ng, K., Hansen, F., Justesen, U. S., Andersen, L. P., Stegger, M., Hammerum, A. M. & Hasman, H., 1 Feb 2018, In : Genome Announcements. 6, 5, p. e01542-17

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published
  46. Published
  47. Published
  48. Published

    Incidence of HACEK bacteraemia in Denmark: A 6-year population-based study

    Lützen, L., Olesen, B., Voldstedlund, M., Christensen, J. J., Moser, C., Knudsen, J. D., Fuursted, K., Hartmeyer, G. N., Chen, M., Søndergaard, T. S., Rosenvinge, F. S., Dzajic, E., Schønheyder, H. C. & Nørskov-Lauritsen, N., Feb 2018, In : International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases. 1, 68, p. 83-87

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published
  50. Published
  51. Published

    Drug-Driven Phenotypic Convergence Supports Rational Treatment Strategies of Chronic Infections

    Imamovic, L., Ellabaan, M. M. H., Dantas Machado, A. M., Citterio, L., Wulff, T., Molin, S., Krogh Johansen, H. & Sommer, M. O. A., 11 Jan 2018, In : Cell. 172, 1-2, p. 121-134.e14

    Research output: Contribution to journalJournal articleResearchpeer-review

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