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The Capital Region of Denmark - a part of Copenhagen University Hospital

Journal of Clinical Microbiology, 0095-1137

Journal

  1. 2018
  2. Published

    Update from a twelve-year nationwide fungaemia surveillance: increasing intrinsic and acquired resistance causes concern

    Astvad, K. M. T., Johansen, H. K., Røder, B. L., Rosenvinge, F. S., Knudsen, J. D., Lemming, L., Schønheyder, H. C., Hare, R. K., Kristensen, L., Nielsen, L., Gertsen, J. B., Dzajic, E., Pedersen, M., Østergård, C., Olesen, B., Søndergaard, T. S. & Arendrup, M. C., Apr 2018, In : Journal of Clinical Microbiology. 56, 4, p. pii: e01564-17

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. 2017
  4. Published

    PREVALENCE OF HUMAN PAPILLOMAVIRUS IN SELF-TAKEN SAMPLES FROM SCREENING NON-ATTENDERS

    Uyen Hoa Lam, J., Rebolj, M., Ejegod, D. M., Pedersen, H., Rygaard, C., Lynge, E., Harder, E., Thomsen, L. T., Kjaer, S. K. & Bonde, J., Oct 2017, In : Journal of Clinical Microbiology. 55, 10, p. 2913-2923

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Dientamoeba fragilis - a Commensal in Children in Danish Day Care Centers

    Jokelainen, P., Hebbelstrup Jensen, B., Andreassen, B. U., Petersen, A. M., Röser, D., Krogfelt, K. A., Nielsen, H. V. & Stensvold, C. R., 1 Jun 2017, In : Journal of Clinical Microbiology. 55, 6, p. 1707-1713

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. 2016
  7. Published

    Differential detection of Human Papillomavirus genotypes and cervical intraepithelial neoplasia by four commercial assays

    Rebolj, M., Bonde, J., Preisler, S., Ejegod, D., Rygaard, C. & Lynge, E., Nov 2016, In : Journal of Clinical Microbiology. 54, 11, p. 2669-2675

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    The BD Onclarity HPV assay on SurePath collected samples meets the International Guidelines for Human Papillomavirus Test Requirements for Cervical Screening

    Ejegod, D., Bottari, F., Pedersen, H., Sandri, M. T. & Bonde, J., Oct 2016, In : Journal of Clinical Microbiology. 54, 9, p. 2267-2272

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    A 5' -nuclease genotyping assay for identification of macrolide-resistant Mycoplasma genitalium in clinical specimens

    Kristiansen, G. Q., Lisby, J. G. & Schønning, K., Jun 2016, In : Journal of Clinical Microbiology. 54, 6, p. 1593-1597

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published
  11. 2015
  12. Published

    A core genome MLST scheme for high-resolution typing of Enterococcus faecium

    de Been, M., Pinholt, M., Top, J., Bletz, S., Mellmann, A., van Schaik, W., Brouwer, E., Rogers, M., Kraat, Y., Bonten, M., Corander, J., Westh, H., Harmsen, D. & Willems, R. J. L., 23 Sep 2015, In : Journal of Clinical Microbiology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Direct DNA Extraction from Mycobacterium tuberculosis Frozen Stocks as a Reculture-Independent Approach to Whole-Genome Sequencing

    Bjorn-Mortensen, K., Zallet, J., Lillebaek, T., Andersen, A. B., Niemann, S. S., Rasmussen, E. M. & Kohl, T. A., Aug 2015, In : Journal of Clinical Microbiology. 53, 8, p. 2716-9 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Comparison of Onclarity Human Papillomavirus (HPV) Assay with Hybrid Capture II HPV DNA Assay for Detection of Cervical Intraepithelial Neoplasia Grade 2 and 3 Lesions

    Bottari, F., Sideri, M., Gulmini, C., Igidbashian, S., Tricca, A., Casadio, C., Carinelli, S., Boveri, S., Ejegod, D., Bonde, J. & Sandri, M. T., Jul 2015, In : Journal of Clinical Microbiology. 53, 7, p. 2109-14 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Unexpected Diagnosis of Cerebral Toxoplasmosis by 16S and D2 Large-Subunit Ribosomal DNA PCR and Sequencing

    Kruse, A. Y. C., Kvich, L., Eickhardt, S., Omland, L. H., Bjarnsholt, T. & Moser, C., Jun 2015, In : Journal of Clinical Microbiology. 53, 6, p. 1983-5 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Core Genome Multilocus Sequence Typing Scheme for High-resolution Typing of Enterococcus faecium

    de Been, M., Pinholt, M., Top, J., Bletz, S., Mellmann, A., van Schaik, W., Brouwer, E., Rogers, M., Kraat, Y., Bonten, M., Corander, J., Westh, H., Harmsen, D. & Willems, R. J. L., 2015, In : Journal of Clinical Microbiology. p. 3788-3797 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. 2014
  18. Published

    Performance of the EUCAST disk diffusion method, the CLSI agar screen method, and the Vitek 2 automated antimicrobial susceptibility testing system for detection of clinical isolates of Enterococci with low- and medium-level VanB-type vancomycin resistance: a multicenter study

    Hegstad, K., Giske, C. G., Haldorsen, B., Matuschek, E., Schønning, K., Leegaard, T. M., Kahlmeter, G., Sundsfjord, A. & NordicAST VRE Detection Study Group, May 2014, In : Journal of Clinical Microbiology. 52, 5, p. 1582-9 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Four cases of bacteremia caused by Oscillibacter ruminantium, a newly described species

    Sydenham, T. V., Arpi, M., Klein, K. & Justesen, U. S., Apr 2014, In : Journal of Clinical Microbiology. 52, 4, p. 1304-7 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples

    Hasman, H., Saputra, D., Sicheritz-Ponten, T., Lund, O., Svendsen, C. A., Frimodt-Møller, N. & Aarestrup, F. M., Jan 2014, In : Journal of Clinical Microbiology. 52, 1, p. 139-46 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Bacterial vaginosis diagnosed by analysis of first-void-urine specimens

    Datcu, R., Gesink, D., Mulvad, G., Montgomery-Andersen, R., Rink, E., Koch, A., Ahrens, P. & Jensen, J. S., 2014, In : Journal of Clinical Microbiology. 52, 1, p. 218-25 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published
  23. 2013
  24. Published

    Dietzia papillomatosis bacteremia

    Rammer, P., Calum, H., Moser, C., Björnsdóttir, M. K., Smedegaard, H., Høiby, N. & Bjarnsholt, T., Jun 2013, In : Journal of Clinical Microbiology. 51, 6, p. 1977-8 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Direct sequencing and RipSeq interpretation as a tool for identification of polymicrobial infections

    Wolff, T. Y., Eickhardt, S., Björnsdottir, M. K., Moser, C., Bjarnsholt, T., Høiby, N. & Thomsen, T. R., Apr 2013, In : Journal of Clinical Microbiology. 51, 4, p. 1281-4 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. 2012
  27. Published

    Culture-dependent and -independent investigations of microbial diversity on urinary catheters

    Xu, Y., Moser, C., Al-Soud, W. A., Sørensen, S., Høiby, N., Nielsen, P. H. & Thomsen, T. R., 2012, In : Journal of Clinical Microbiology. 50, 12, p. 3901-8 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    Enteroaggregative Escherichia coli O78:H10, the cause of an outbreak of urinary tract infection

    Olesen, B., Scheutz, F., Andersen, R. L., Menard, M., Boisen, N., Johnston, B., Hansen, D. S., Krogfelt, K., Nataro, J. P. & Johnson, J. R., 2012, In : Journal of Clinical Microbiology. 50, 11, p. 3703-11 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    Matrix-assisted laser desorption ionization-time of flight mass spectrometry analysis of Gram-positive, catalase-negative cocci not belonging to the Streptococcus or Enterococcus genus and benefits of database extension

    Christensen, J. J., Dargis, R., Hammer, M., Justesen, U. S., Nielsen, X. C., Kemp, M., Danish MALDI-TOF MS Study Group & Tvede, M., 2012, In : Journal of Clinical Microbiology. 50, 5, p. 1787-91 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. 2011
  31. Published

    True Microbiota Involved in Chronic Lung Infection of Cystic Fibrosis Patients Found by Culturing and 16S rRNA Gene Analysis

    Rudkjøbing, V. B., Thomsen, T. R., Alhede, M., Kragh, K. N., Nielsen, P. H., Johansen, U. R., Givskov, M., Høiby, N. & Bjarnsholt, T., 19 Oct 2011, In : Journal of Clinical Microbiology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    Diagnostic issues, clinical characteristics, and outcomes for patients with fungemia

    Arendrup, M. C., Sulim, S., Holm, A., Nielsen, S. D., Nielsen, L., Knudsen, J. D., Drenck, N. E., Christensen, J. J. & Johansen, H. K., 1 Sep 2011, In : Journal of Clinical Microbiology. 49, 9, p. 3300-8 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    Aspergillus species and other molds in respiratory samples from patients with cystic fibrosis: a laboratory-based study with focus on Aspergillus fumigatus azole resistance

    Mortensen, K. L., Jensen, R. H., Johansen, H. K., Skov, M., Pressler, T., Howard, S. J., Leatherbarrow, H., Mellado, E. & Arendrup, M. C., 1 Jun 2011, In : Journal of Clinical Microbiology. 49, 6, p. 2243-51 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    National surveillance of fungemia in Denmark (2004 to 2009)

    Arendrup, M. C., Bruun, B., Christensen, J. J., Fuursted, K., Johansen, H. K., Kjaeldgaard, P., Knudsen, J. D., Kristensen, L., Møller, J., Nielsen, L., Rosenvinge, F. S., Røder, B., Schønheyder, H. C., Thomsen, M. & Truberg, K., 1 Jan 2011, In : Journal of Clinical Microbiology. 49, 1, p. 325-34 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. 2010
  36. Published

    Unusual distribution of Burkholderia cepacia complex species in Danish cystic fibrosis clinics may stem from restricted transmission between patients

    Nørskov-Lauritsen, N., Johansen, H. K., Fenger, M. G., Nielsen, X. C., Pressler, T., Olesen, H. V. & Høiby, N., 1 Aug 2010, In : Journal of Clinical Microbiology. 48, 8, p. 2981-3 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Sodium polyanethole sulfonate as an inhibitor of activation of complement function in blood culture systems

    Palarasah, Y., Skjoedt, M-O., Vitved, L., Andersen, T. E., Skjødt, K. & Koch, C., Mar 2010, In : Journal of Clinical Microbiology. 48, 3, p. 908-14 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Changing epidemiology of methicillin-resistant Staphylococcus aureus in Iceland from 2000 to 2008: a challenge to current guidelines

    Holzknecht, B. J., Hardardottir, H., Haraldsson, G. H., Westh, H., Valsdottir, F., Boye, K., Karlsson, H. S., Kristinsson, K. & Gudlaugsson, O., 2010, In : Journal of Clinical Microbiology. 48, 11, p. 4221-7 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. 2009
  40. Published

    Nonrandom distribution of Pseudomonas aeruginosa and Staphylococcus aureus in chronic wounds

    Fazli, M., Bjarnsholt, T., Kirketerp-Møller, K., Jørgensen, B., Andersen, A. S., Krogfelt, K. A., Givskov, M. & Tolker-Nielsen, T., 1 Dec 2009, In : Journal of Clinical Microbiology. 47, 12, p. 4084-9 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    A common variant of staphylococcal cassette chromosome mec type IVa in isolates from Copenhagen, Denmark, is not detected by the BD GeneOhm methicillin-resistant Staphylococcus aureus assay

    Bartels, M. D., Boye, K., Rohde, S. M., Larsen, A. R., Torfs, H., Bouchy, P., Skov, R. & Westh, H., 2009, In : Journal of Clinical Microbiology. 47, 5, p. 1524-7 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Non-spa-typeable clinical Staphylococcus aureus strains are naturally occurring protein A mutants

    Baum, C., Haslinger-Löffler, B., Westh, H., Boye, K., Peters, G., Neumann, C. & Kahl, B. C., 2009, In : Journal of Clinical Microbiology. 47, 11, p. 3624-9 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Persistence of Escherichia coli clones and phenotypic and genotypic antibiotic resistance in recurrent urinary tract infections in childhood

    Kõljalg, S., Truusalu, K., Vainumäe, I., Stsepetova, J., Sepp, E. & Mikelsaar, M., 2009, In : Journal of Clinical Microbiology. 47, 1, p. 99-105 7 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Three-decade epidemiological analysis of Escherichia coli O15:K52:H1

    Olesen, B., Scheutz, F., Menard, M., Skov, M. N., Kolmos, H. J., Kuskowski, M. A. & Johnson, J. R., 2009, In : Journal of Clinical Microbiology. 47, 6, p. 1857-62 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Two distinct clones of methicillin-resistant Staphylococcus aureus (MRSA) with the same USA300 pulsed-field gel electrophoresis profile: a potential pitfall for identification of USA300 community-associated MRSA

    Larsen, A. R., Goering, R., Stegger, M., Lindsay, J. A., Gould, K. A., Hinds, J., Sørum, M., Westh, H., Boye, K. & Skov, R., 2009, In : Journal of Clinical Microbiology. 47, 11, p. 3765-8 3 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  46. 2008
  47. Published

    Distribution, organization, and ecology of bacteria in chronic wounds

    Kirketerp-Møller, K., Jensen, P. Ø., Fazli, M., Madsen, K. G., Pedersen, J., Moser, C., Tolker-Nielsen, T., Høiby, N., Givskov, M. C. & Bjarnsholt, T., 1 Aug 2008, In : Journal of Clinical Microbiology. 46, 8, p. 2717-22 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. 2007
  49. Published

    Host genetic resistance to symptomatic norovirus (GGII.4) infections in Denmark

    Kindberg, E., Akerlind, B., Johnsen, C., Knudsen, J. D., Heltberg, O., Larson, G., Böttiger, B. & Svensson, L., 2007, In : Journal of Clinical Microbiology. 45, 8, p. 2720-2 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Host genetic resistance to symptomatic norovirus (GGII.4) infections in Denmark.

    Kindberg, E., Akerlind, B., Johnsen, C., Knudsen, I. J. D., Heltberg, O., Larson, G., Bottiger, B. & Svensson, L., 2007, In : Journal of Clinical Microbiology. 30

    Research output: Contribution to journalJournal articleResearchpeer-review

  51. Published

    Monitoring of hepatitis C virus quasispecies in chronic infection by matrix-assisted laser desorption ionization-time of flight mass spectrometry mutation detection

    Yea, C., Bukh, J., Ayers, M., Roberts, E., Krajden, M. & Tellier, R., 2007, In : Journal of Clinical Microbiology. 45, 3, p. 1053-7 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  52. 2006
  53. Rapid genotypic detection of rifampin- and isoniazid-resistant Mycobacterium tuberculosis directly in clinical specimens

    Bang, D., Andersen, Å. B. & Thomsen, V. Ø., Jul 2006, In : Journal of Clinical Microbiology. 44, 7, p. 2605-8 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  54. Published

    High Interlaboratory Reprocucibility of DNA Sequence-based Typing of Bacteria in a Multicenter Study

    Sousa, MA. D., Boye, K., Lencastre, H. D., Deplano, A., Enright, MC., Etienne, J., Friedrich, A., Harmsen, D., Holmes, A., Huijsdens, X., Kearns, AM., Mellmann, A., Meugnier, H., Rasheed, JK., Spalburg, E., Strommenger, B., Struelens, MJ., Tenover, FC., Thomas, J., Vogel, U., Westh, H., Xu, J. & Witte, W., 2006, In : Journal of Clinical Microbiology. 44, p. 619-21

    Research output: Contribution to journalJournal articleResearchpeer-review

  55. Published

    Pulsed-field gel electrophoresis typing of Escherichia coli strains from samples collected before and after pivmecillinam or placebo treatment of uncomplicated community-acquired urinary tract infection in women

    Ejrnaes, K., Sandvang, D., Lundgren, B., Ferry, S., Holm, S., Monsen, T., Lundholm, R. & Frimodt-Moller, N., 2006, In : Journal of Clinical Microbiology. 44, 5, p. 1776-81 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  56. Published

    Pulsed-field gel electrophoresis typing of Eschericia coli strains from samples collected before and after pivmecillinam or placebo treatment of uncomplicated community-acquired urinary tract infection in women.

    Ejrnæs, K., Sandvang, D., Lundgren, B., Ferry, S., Holm, S., Monsen, T., Lundholm, R. & Frimodt-Møller, N., 2006, In : Journal of Clinical Microbiology. 44, 5, p. 1776-81

    Research output: Contribution to journalJournal articleResearchpeer-review

  57. 2005
  58. Published

    Characterization of Rotavirus Strains in a Danish Population: High Frequency of Mixed Infections and Diversity within the VP4 Gene of P[8] Strains

    Fischer, T. K., Eugen-Olsen, J., Pedersen, A. G. J., Mølbak, K., Böttiger, B., Rostgaard, K. & Nielsen, N. M., 2005, In : Journal of Clinical Microbiology. 43, 3, p. 1099-1104 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  59. Published

    Seminational surveillance of fungemia in Denmark: notably high rates of fungemia and numbers of isolates with reduced azole susceptibility

    Arendrup, M. C., Fuursted, K., Gahrn-Hansen, B., Jensen, I. M., Knudsen, J. D., Lundgren, B., Schønheyder, H. C. & Tvede, M., 2005, In : Journal of Clinical Microbiology. 43, 9, p. 4434-40 6 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  60. 2004
  61. Published

    Improved sensitivity of nucleic acid amplification for rapid diagnosis of tuberculous meningitis

    Johansen, I. S., Lundgren, B., Tabak, F., Petrini, B., Hosoglu, S., Saltoglu, N. & Thomsen, V. Ø., 2004, In : Journal of Clinical Microbiology. 42, 7, p. 3036-40 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  62. Published

    Problems in identification of Francisella philomiragia associated with fatal bacteremia in a patient with chronic granulomatous disease.

    Friis-Møller, A., Lemming, L. E., Valerius, N. H. & Bruun, B., 2004, In : Journal of Clinical Microbiology. 42, 4, p. 1840-1842 3 p.

    Research output: Contribution to journalJournal articleResearch

  63. Published

    Specific T-cell epitopes for immunoassay-based diagnosis of Mycobacterium tuberculosis infection

    Brock, I., Weldingh, K., Leyten, EM., Arend, SM., Ravn, P. & Andersen, P., 2004, In : Journal of Clinical Microbiology. 42, 6, p. 2379-87

    Research output: Contribution to journalJournal articleResearchpeer-review

  64. 2003
  65. Cohort study of Guinean children: incidence, pathogenicity, conferred protection, and attributable risk for enteropathogens during the first 2 years of life

    Valentiner-Branth, P., Steinsland, H., Fischer, T. K., Perch, M., Scheutz, F., Dias, F., Aaby, P., Mølbak, K. & Sommerfelt, H., Sep 2003, In : Journal of Clinical Microbiology. 41, 9, p. 4238-45 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  66. Published

    Direct detection of multidrug-resistant Mycobacterium tuberculosis in clinical specimens in low- and high-incidence countries by line probe assay

    Johansen, I. S., Lundgren, B., Sosnovskaja, A. & Thomsen, V. Ø., 2003, In : Journal of Clinical Microbiology. 41, 9, p. 4454-6 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

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