JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

Jan Christian Bryne; Eivind Valen; Man-Hung Eric Tang; Troels Marstrand; Ole Winther; Isabelle da Piedade; Anders Krogh; Boris Lenhard; Albin Sandelin

doi:10.1093/nar/gkm955

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

Jan Christian Bryne, Eivind Valen, Man-Hung Eric Tang, Troels Marstrand, Ole Winther, Isabelle da Piedade, Anders Krogh, Boris Lenhard, Albin Sandelin

Abstract

JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR database-the JASPAR CORE sub-database-has increased by 12% in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.

Originalsprog	Engelsk
Tidsskrift	Nucleic Acids Research
Vol/bind	36
Udgave nummer	Database issue
Sider (fra-til)	D102-6
ISSN	0305-1048
DOI	https://doi.org/10.1093/nar/gkm955
Status	Udgivet - jan. 2008
Udgivet eksternt	Ja

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10.1093/nar/gkm955

Citationsformater

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title = "JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update",

abstract = "JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR database-the JASPAR CORE sub-database-has increased by 12% in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.",

keywords = "Access to Information, Animals, Binding Sites, Computational Biology, Data Interpretation, Statistical, Databases, Nucleic Acid, Humans, Internet, Models, Genetic, Promoter Regions, Genetic, RNA Splice Sites, Regulatory Elements, Transcriptional, Software, Transcription Factors/metabolism, User-Computer Interface",

author = "Bryne, {Jan Christian} and Eivind Valen and Tang, {Man-Hung Eric} and Troels Marstrand and Ole Winther and {da Piedade}, Isabelle and Anders Krogh and Boris Lenhard and Albin Sandelin",

year = "2008",

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doi = "10.1093/nar/gkm955",

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AU - Bryne, Jan Christian

AU - Valen, Eivind

AU - Tang, Man-Hung Eric

AU - Marstrand, Troels

AU - Winther, Ole

AU - da Piedade, Isabelle

AU - Krogh, Anders

AU - Lenhard, Boris

AU - Sandelin, Albin

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AB - JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR database-the JASPAR CORE sub-database-has increased by 12% in size, and three new specialized sub-databases have been added. New functions include clustering of matrix models by similarity, generation of random matrices by sampling from selected sets of existing models and a language-independent Web Service applications programming interface for matrix retrieval. JASPAR is available at http://jaspar.genereg.net.

KW - Access to Information

KW - Animals

KW - Binding Sites

KW - Computational Biology

KW - Data Interpretation, Statistical

KW - Databases, Nucleic Acid

KW - Humans

KW - Internet

KW - Models, Genetic

KW - Promoter Regions, Genetic

KW - RNA Splice Sites

KW - Regulatory Elements, Transcriptional

KW - Software

KW - Transcription Factors/metabolism

KW - User-Computer Interface

U2 - 10.1093/nar/gkm955

DO - 10.1093/nar/gkm955

M3 - Journal article

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SP - D102-6

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - Database issue

ER -

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

Abstract

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