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Region Hovedstaden - en del af Københavns Universitetshospital
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Ensembl Genomes 2013: scaling up access to genome-wide data

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

DOI

  1. BloodSpot: a database of healthy and malignant haematopoiesis updated with purified and single cell mRNA sequencing profiles

    Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

  2. Peak-valley-peak pattern of histone modifications delineates active regulatory elements and their directionality

    Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

  3. BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis

    Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

  4. DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families

    Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

  1. Separate and Combined Effects of GIP and GLP-1 Infusions on Bone Metabolism in Overweight Men without Diabetes

    Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

  2. Do callers to out-of-hours care misuse an option to jump the phone queue?

    Publikation: Bidrag til tidsskriftTidsskriftartikelForskningpeer review

  3. Long term treatment with stimulant laxatives - clinical evidence for effectiveness and safety?

    Publikation: Bidrag til tidsskriftReviewForskningpeer review

  • Paul Julian Kersey
  • James E Allen
  • Mikkel Christensen
  • Paul Davis
  • Lee J Falin
  • Christoph Grabmueller
  • Daniel Seth Toney Hughes
  • Jay Humphrey
  • Arnaud Kerhornou
  • Julia Khobova
  • Nicholas Langridge
  • Mark D McDowall
  • Uma Maheswari
  • Gareth Maslen
  • Michael Nuhn
  • Chuang Kee Ong
  • Michael Paulini
  • Helder Pedro
  • Iliana Toneva
  • Mary Ann Tuli
  • Brandon Walts
  • Gareth Williams
  • Derek Wilson
  • Ken Youens-Clark
  • Marcela K Monaco
  • Joshua Stein
  • Xuehong Wei
  • Doreen Ware
  • Daniel M Bolser
  • Kevin Lee Howe
  • Eugene Kulesha
  • Daniel Lawson
  • Daniel Michael Staines
Vis graf over relationer

Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species. The project exploits and extends technologies for genome annotation, analysis and dissemination, developed in the context of the vertebrate-focused Ensembl project, and provides a complementary set of resources for non-vertebrate species through a consistent set of programmatic and interactive interfaces. These provide access to data including reference sequence, gene models, transcriptional data, polymorphisms and comparative analysis. This article provides an update to the previous publications about the resource, with a focus on recent developments. These include the addition of important new genomes (and related data sets) including crop plants, vectors of human disease and eukaryotic pathogens. In addition, the resource has scaled up its representation of bacterial genomes, and now includes the genomes of over 9000 bacteria. Specific extensions to the web and programmatic interfaces have been developed to support users in navigating these large data sets. Looking forward, analytic tools to allow targeted selection of data for visualization and download are likely to become increasingly important in future as the number of available genomes increases within all domains of life, and some of the challenges faced in representing bacterial data are likely to become commonplace for eukaryotes in future.

OriginalsprogEngelsk
TidsskriftNucleic Acids Research
Vol/bind42
Udgave nummerDatabase issue
Sider (fra-til)D546-52
ISSN0305-1048
DOI
StatusUdgivet - jan. 2014

ID: 44522011