Evolution of biofilm-adapted gene expression profiles in lasR-deficient clinical Pseudomonas aeruginosa isolates

Jeske, A., Arce-Rodriguez, A., Thöming, J. G., Tomasch, J. & Häussler, S., dec. 2022, I: NPJ biofilms and microbiomes. 8, 1, 6.

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Prevalence of biofilms in acute infections challenges a longstanding paradigm

Kolpen, M., Jensen, P. Ø., Faurholt-Jepsen, D. & Bjarnsholt, T., dec. 2022, I: Biofilm. 4, s. 100080 100080.

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Structural basis for PoxtA-mediated resistance to phenicol and oxazolidinone antibiotics

Crowe-McAuliffe, C., Murina, V., Turnbull, K. J., Huch, S., Kasari, M., Takada, H., Nersisyan, L., Sundsfjord, A., Hegstad, K., Atkinson, G. C., Pelechano, V., Wilson, D. N. & Hauryliuk, V., dec. 2022, I: Nature Communications. 13, 1, 1860.

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Biomarkers for iron metabolism among patients hospitalized with community-acquired pneumonia caused by infection with SARS-CoV-2, bacteria, and influenza

Hegelund, M. H., Glenthøj, A., Ryrsø, C. K., Ritz, C., Dungu, A. M., Sejdic, A., List, K. C. K., Krogh-Madsen, R., Lindegaard, B., Kurtzhals, J. A. L. & Faurholt-Jepsen, D., sep. 2022, I: APMIS - Journal of Pathology, Microbiology and Immunology. 130, 9, s. 590-596 7 s.

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SARS-CoV-2 in asymptomatic Danish infants and their mothers from April 2020 to January 2022

Malon, M., Jensen, A., Hjort, J., Kirkby, N. S., Laursen, A. C. L., Soerensen, J. K., Vittrup, D. M. & Stensballe, L. G., sep. 2022, I: Acta paediatrica. 111, 9, s. 1779-1780 2 s.

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Self-assessed health status and associated mortality in endocarditis: secondary findings from the POET trial

Bundgaard, J. S., Iversen, K., Pries-Heje, M., Ihlemann, N., Gill, S. U., Madsen, T., Elming, H., Povlsen, J. A., Bruun, N. E., Høfsten, D. E., Fuursted, K., Christensen, J. J., Schultz, M., Rosenvinge, F., Helweg-Larsen, J., Køber, L., Torp-Pedersen, C., Fosbøl, E. L., Tønder, N., Moser, C. & 2 flere, Bundgaard, H. & Mogensen, U. M., sep. 2022, I: Quality of life research : an international journal of quality of life aspects of treatment, care and rehabilitation. 31, 9, s. 2655-2662 8 s.

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Temporal Changes, Patient Characteristics, and Mortality, According to Microbiological Cause of Infective Endocarditis: A Nationwide Study

Østergaard, L., Voldstedlund, M., Bruun, N. E., Bundgaard, H., Iversen, K., Køber, N., Christensen, J. J., Rosenvinge, F. S., Jarløv, J. O., Moser, C., Andersen, C. Ø., Coia, J., Marmolin, E. S., Søgaard, K. K., Lemming, L., Køber, L. & Fosbøl, E. L., 10 aug. 2022, (E-pub ahead of print) I: Journal of the American Heart Association. s. 1-17 17 s., 25801T.

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The biofilm life cycle: expanding the conceptual model of biofilm formation

Sauer, K., Stoodley, P., Goeres, D. M., Hall-Stoodley, L., Burmølle, M., Stewart, P. S. & Bjarnsholt, T., 3 aug. 2022, (E-pub ahead of print) I: Nature Reviews. Microbiology.

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A nationwide analytical and clinical evaluation of 44 rapid antigen tests for SARS-CoV-2 compared to RT-qPCR

Schneider, U. V., Forsberg, M. W., Leineweber, T. D., Jensen, C. B., Ghathian, K., Agergaard, C. N., Mortensen, K. K., Cohen, A., Jørgensen, C. S., Larsen, H., Hansen, M. B., Saleme, U., Koch, A., Kirkby, N. S., Kallemose, T., Schaadt, M. L., Jensen, F. H., Jørgensen, R. L., Ma, C. M. G., Steenhard, N. & 3 flere, Knudsen, J. D., Lisby, J. G. & National Danish RAT testing group, aug. 2022, I: Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology. 153, s. 105214 105214.

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Dynamics of a Staphylococcus aureus infective endocarditis simulation model

Schwartz, F. A., Nielsen, L., Andersen, J. S., Bock, M., Christophersen, L., Sunnerhagen, T., Lerche, C. J., Bay, L., Bundgaard, H., Høiby, N. & Moser, C., aug. 2022, I: APMIS - Journal of Pathology, Microbiology and Immunology. 130, 8, s. 515-523 9 s.

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Endotracheal lactate reflects lower respiratory tract infections and inflammation in intubated patients

Kolpen, M., Sørensen, C. D., Faurholt-Jepsen, D., Boëtius Hertz, F., Jensen, P. Ø. & Bestle, M. H., aug. 2022, I: APMIS - Journal of Pathology, Microbiology and Immunology. 130, 8, s. 507-514 8 s.

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Increased sputum lactate during oral glucose tolerance test in cystic fibrosis

Jensen, P. Ø., Nielsen, B. U., Kolpen, M., Pressler, T., Faurholt-Jepsen, D. & Mathiesen, I. H. M., aug. 2022, I: APMIS - Journal of Pathology, Microbiology and Immunology. 130, 8, s. 535-539 5 s.

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Invasive candidiasis: investigational drugs in the clinical development pipeline and mechanisms of action

Hoenigl, M., Sprute, R., Arastehfar, A., Perfect, J. R., Lass-Flörl, C., Bellmann, R., Prattes, J., Thompson, G. R., Wiederhold, N. P., Al Obaidi, M. M., Willinger, B., Arendrup, M. C., Koehler, P., Oliverio, M., Egger, M., Schwartz, I. S., Cornely, O. A., Pappas, P. G. & Krause, R., aug. 2022, I: Expert Opinion on Investigational Drugs. 31, 8, s. 795-812 18 s.

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Transcriptomic Fingerprint of Bacterial Infection in Lower Extremity Ulcers

Fritz, B., Bier-Kirkegaard, J., Nielsen, C. H., Kirketerp-Møller, K., Malone, M. & Bjarnsholt, T., aug. 2022, I: APMIS - Journal of Pathology, Microbiology and Immunology. 130, 8, s. 524-534 11 s.

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Surgical treatment of patients with infective endocarditis: changes in temporal use, patient characteristics, and mortality-a nationwide study

Jensen, A. D., Østergaard, L., Petersen, J. K., Graversen, P., Butt, J. H., Bundgaard, H., Moser, C., Smerup, M. H., Modrau, I. S., Iversen, K., Bruun, N. E., Torp-Pedersen, C., Gislason, G., Wang, A., Ragnarsson, S., Povlsen, J. A., Køber, L. & Fosbøl, E. L., 29 jul. 2022, I: BMC Cardiovascular Disorders. 22, 1, s. 338 338.

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Molecular mechanisms of acquired antifungal drug resistance in principal fungal pathogens and EUCAST guidance for their laboratory detection and clinical implications

Rogers, T. R., Verweij, P. E., Castanheira, M., Dannaoui, E., White, P. L., Arendrup, M. C., Subcommittee on Antifungal Susceptibility Testing (AFST) of the ESCMID European Committee for Antimicrobial Susceptibility Testing (EUCAST) & Arendrup, M. C., 28 jul. 2022, I: The Journal of antimicrobial chemotherapy. 77, 8, s. 2053-2073 21 s.

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Changes in body mass index and clinical outcomes after initiation of contemporary antiretroviral regimens

EuroSIDA study group, 18 jul. 2022, (E-pub ahead of print) I: AIDS.

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Influence of Prior Imaging Information on Diagnostic Accuracy for Focal Skeletal Processes-A Retrospective Analysis of the Consistency between Biopsy-Verified Imaging Diagnoses

Lange, M. B., Petersen, L. J., Lausen, M., Bruun, N. H., Nielsen, M. B. & Zacho, H. D., 17 jul. 2022, I: Diagnostics. 12, 7, s. 1735

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Characteristics and Outcomes of Patients with Delftia acidovorans Infections: a Retrospective Cohort Study

Højgaard, S. M. M., Rezahosseini, O., Knudsen, J. D., Fuglebjerg, N. J. U., Skov, M., Nielsen, S. D. & Harboe, Z. B., 14 jul. 2022, (E-pub ahead of print) I: Microbiology spectrum. s. e0032622

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Emergence of circulating influenza A H3N2 viruses with genetic drift in the matrix gene: Be alert of false negative test results

Jørgensen, R. L., Lerche, C. J., Pedersen, M. S., Kirkby, N., Botnen, A. B., Trebbien, R., Nilsson-Møller, S., Pinholt, M., Nielsen, A. C. Y., Westh, H., Lisby, J. G. & Schneider, U. V., 14 jul. 2022, (E-pub ahead of print) I: APMIS - Journal of Pathology, Microbiology and Immunology.

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Incidence and severity of SARS-CoV-2 infections in liver and kidney transplant recipients in the post-vaccination era: Real-life data from Denmark

Hamm, S. R., Rezahosseini, O., Møller, D. L., Loft, J. A., Poulsen, J. R., Knudsen, J. D., Pedersen, M. S., Schønning, K., Harboe, Z. B., Rasmussen, A., Sørensen, S. S. & Nielsen, S. D., 8 jul. 2022, (E-pub ahead of print) I: American Journal of Transplantation.

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Vaginal microbiome following orally administered probiotic

Boetius Hertz, F., Holm, J. B., Pallejá, A., Björnsdóttir, M. K., Mikkelsen, L. S., Brandsborg, E. & Frimodt-Møller, N., 8 jul. 2022, (E-pub ahead of print) I: APMIS - Journal of Pathology, Microbiology and Immunology.

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Oral Fluoroquinolone and the Risk of Acute Liver Injury: Is It Related to the Antibiotics or the Infection?

Rezahosseini, O., Knudsen, J., Rasmussen, A. & Nielsen, S. D., 6 jul. 2022, I: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 74, 12, s. 2261 ciab966.

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Amplicon sequencing demonstrates comparable follicular mycobiomes in patients with hidradenitis suppurativa compared with healthy controls

Ring, H. C., Thorsen, J., Fuursted, K., Bjarnsholt, T., Bay, L., Egeberg, A., Ingham, A. C., Vedel Nielsen, H., Frew, J. W., Saunte, D. M. L., Thomsen, S. F. & Jemec, G. B., jul. 2022, I: Journal of the European Academy of Dermatology and Venereology. 36, 7, s. e580-e583

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Animal models of chronic and recurrent Pseudomonas aeruginosa lung infection - significance of macrolide treatment

Thomsen, K., Kobayashi, O., Kishi, K., Shirai, R., Østrup Jensen, P., Heydorn, A., Hentzer, M., Calum, H., Christophersen, L., Høiby, N. & Moser, C., jul. 2022, I: APMIS - Journal of Pathology, Microbiology and Immunology. 130, 7, s. 458-476 19 s., 13161.

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Disinfection trials with terbinafine-susceptible and terbinafine-resistant dermatophytes

Skaastrup, K. N., Astvad, K. M. T., Arendrup, M. C., Jemec, G. B. E. & Lindhardt Saunte, D. M., jul. 2022, I: Mycoses. 65, 7, s. 741-746 6 s.

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Injection site microflora in persons with diabetes: why needle reuse is not associated with increased infections?

Wareham-Mathiassen, S., Bay, L., Glenting, V. P., Fatima, N., Bengtsson, H. & Bjarnsholt, T., jul. 2022, I: APMIS - Journal of Pathology, Microbiology and Immunology. 130, 7, s. 404-416 13 s.

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Murine burn lesion model for studying acute and chronic wound infections

Calum, H., Trøstrup, H., Laulund, A. S., Thomsen, K., Christophersen, L., Høiby, N. & Moser, C., jul. 2022, I: APMIS - Journal of Pathology, Microbiology and Immunology. 130, 7, s. 477-490 14 s., 13228.

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Performance of PCR based syndromic testing compared to bacterial culture in patients with suspected pneumonia applying microscopy for quality assessment

Andrews, V., Pinholt, M., Schneider, U. V., Schønning, K., Søes, L. M. & Lisby, G., jul. 2022, I: APMIS - Journal of Pathology, Microbiology and Immunology. 130, 7, s. 417-426 10 s., 13232.

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Persistence and genetic adaptation of Pseudomonas aeruginosa in patients with chronic obstructive pulmonary disease

Eklöf, J., Misiakou, M. A., Sivapalan, P., Armbruster, K., Browatzki, A., Nielsen, T. L., Lapperre, T. S., Andreassen, H. F., Janner, J., Ulrik, C. S., Gabrielaite, M., Johansen, H. K., Jensen, A., Nielsen, T. V., Hertz, F. B., Ghathian, K., Calum, H., Wilcke, T., Seersholm, N., Jensen, J-U. S. & 1 flere, Marvig, R. L., jul. 2022, I: Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 28, 7, s. 990-995 6 s., 017.

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Polymicrobial infections can select against Pseudomonas aeruginosa mutators because of quorum-sensing trade-offs

Luján, A. M., Paterson, S., Hesse, E., Sommer, L. M., Marvig, R. L., Sharma, M. D., Alseth, E. O., Ciofu, O., Smania, A. M., Molin, S., Johansen, H. K. & Buckling, A., jul. 2022, I: Nature ecology & evolution. 6, 7, s. 979-988 10 s.

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Risk of hospitalisation associated with infection with SARS-CoV-2 omicron variant versus delta variant in Denmark: an observational cohort study

Bager, P., Wohlfahrt, J., Bhatt, S., Stegger, M., Legarth, R., Møller, C. H., Skov, R. L., Valentiner-Branth, P., Voldstedlund, M., Fischer, T. K., Simonsen, L., Kirkby, N. S., Thomsen, M. K., Spiess, K., Marving, E., Larsen, N. B., Lillebaek, T., Ullum, H., Mølbak, K., Krause, T. G. & 4 flere, Omicron-Delta study group, Johannesen, C. K., Harboe, ZI. B. & Holler, J. G., jul. 2022, I: The Lancet Infectious Diseases. 22, 7, s. 967-976 10 s.

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True infection or contamination in patients with positive Cutibacterium blood cultures-a retrospective cohort study

Boman, J., Nilson, B., Sunnerhagen, T. & Rasmussen, M., jul. 2022, I: European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology. 41, 7, s. 1029-1037 9 s.

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Use of inhaled antibiotics among Danish patients with cystic fibrosis

Møller, R., Nielsen, B. U., Faurholt-Jepsen, D., Katzenstein, T. L., Skov, M., Philipsen, L. K. D., Pressler, T., Johansen, H. K. & Qvist, T., jul. 2022, I: Pediatric Pulmonology. 57, 7, s. 1726-1734 9 s.

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No Effect of Lactobacillus rhamnosus GG on Eradication of Colonization by Vancomycin-Resistant Enterococcus faecium or Microbiome Diversity in Hospitalized Adult Patients

Rubin, I. M. C., Mollerup, S., Broholm, C., Knudsen, S. B., Baker, A., Helms, M., Holm, M. K. A., Kallemose, T., Westh, H., Dahl Knudsen, J., Pinholt, M. & Petersen, A. M., 29 jun. 2022, I: Microbiology spectrum. 10, 3, e0234821.

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New methods for quantification of amoxicillin and clindamycin in human plasma using HPLC with UV detection

Greibe, E., Moser, C. E., Bruun, N. E. & Hoffmann-Lücke, E., 23 jun. 2022, (E-pub ahead of print) I: The Journal of antimicrobial chemotherapy.

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The diagnostic value of serum Borrelia burgdorferi antibodies and seroconversion after Lyme neuroborreliosis, a nationwide observational study

Tetens, M. M., Dessau, R., Ellermann-Eriksen, S., Andersen, N. S., Jørgensen, C. S., Østergaard, C., Bodilsen, J., Damgaard, D. F., Bangsborg, J., Nielsen, A. C., Møller, J. K., Omland, L. H., Obel, N. & Lebech, A-M., 13 jun. 2022, (E-pub ahead of print) I: Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

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One Day in Denmark: Comparison of Phenotypic and Genotypic Antimicrobial Susceptibility Testing in Bacterial Isolates From Clinical Settings

Rebelo, A. R., Bortolaia, V., Leekitcharoenphon, P., Hansen, D. S., Nielsen, H. L., Ellermann-Eriksen, S., Kemp, M., Røder, B. L., Frimodt-Møller, N., Søndergaard, T. S., Coia, J. E., Østergaard, C., Westh, H. & Aarestrup, F. M., 10 jun. 2022, I: Frontiers in Microbiology. 13, s. 804627 804627.

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A comparison of risk factors for cryptosporidiosis and non-cryptosporidiosis diarrhoea: A case-case-control study in Ethiopian children

Johansen, Ø. H., Abdissa, A., Zangenberg, M., Mekonnen, Z., Eshetu, B., Sharew, B., Moyo, S., Sommerfelt, H., Langeland, N., Robertson, L. J. & Hanevik, K., jun. 2022, I: PLoS Neglected Tropical Diseases. 16, 6, s. 1-20 20 s., e0010508.

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Oxygen gradient ektacytometry does not predict pain in children with sickle cell anaemia

Nardo-Marino, A., Petersen, J., Brewin, J. N., Birgens, H., Williams, T. N., Kurtzhals, J. A. L., Rees, D. C. & Glenthøj, A., jun. 2022, I: British Journal of Haematology. 197, 5, s. 609-617 9 s.

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Prevalence and Dynamic Changes in Lung Ultrasound Findings among Adults with Uncomplicated Malaria and Controls in the Amazon Basin, Brazil

Wegener, A., Holm, A. E., Gomes, L. C., Lima, K. O., Matos, L. O., Vieira, I. V. M., Kaagaard, M. D., de Souza, R. M., Hviid, L., Guimarães Lacerda, M. V., Vestergaard, L. S., Farias Marinho, C. R., Platz, E., Biering-Sørensen, T., Silvestre, O. M. & Brainin, P., jun. 2022, I: The American journal of tropical medicine and hygiene. 106, 6

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Synthetic oxepanoprolinamide iboxamycin is active against Listeria monocytogenes despite the intrinsic resistance mediated by VgaL/Lmo0919 ABCF ATPase

Brodiazhenko, T., Turnbull, K. J., Wu, K. J. Y., Takada, H., Tresco, B. I. C., Tenson, T., Myers, A. G. & Hauryliuk, V., jun. 2022, I: JAC-antimicrobial resistance. 4, 3, s. dlac061

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The association between common urogenital infections and cervical neoplasia - A nationwide cohort study of over four million women (2002-2018)

Jansåker, F., Li, X., Knudsen, J. D., Frimodt-Møller, N., Borgfeldt, C. & Sundquist, K., jun. 2022, I: The Lancet regional health. Europe. 17, s. 100378 100378.

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Early phenotypic detection of fluconazole- and anidulafungin-resistant Candida glabrata isolates

Georgiou, P-C., Arendrup, M. C. & Meletiadis, J., 29 maj 2022, I: The Journal of antimicrobial chemotherapy. 77, 6, s. 1655-1661 7 s.

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A novel Borrelia-specific real-time PCR assay is not suitable for diagnosing Lyme neuroborreliosis

Pedersen, R. R., Kragh, K. N., Fritz, B. G., Ørbæk, M., Østrup Jensen, P., Lebech, A-M. & Bjarnsholt, T., 25 maj 2022, (E-pub ahead of print) I: Ticks and Tick-borne Diseases. 13, 5, s. 101971 101971.

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Mucoid Pseudomonas aeruginosa Can Produce Calcium-Gelled Biofilms Independent of the Matrix Components Psl and CdrA

Jacobs, H. M., O'Neal, L., Lopatto, E., Wozniak, D. J., Bjarnsholt, T. & Parsek, M. R., 17 maj 2022, I: Journal of Bacteriology. 204, 5, s. e0056821

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Severity of anaemia and association with all-cause mortality in patients with medically managed left-sided endocarditis

Pries-Heje, M. M., Hasselbalch, R. B., Wiingaard, C., Fosbøl, E. L., Glenthøj, A. B., Ihlemann, N., Gill, S. U. A., Christiansen, U., Elming, H., Bruun, N. E., Povlsen, J. A., Helweg-Larsen, J., Schultz, M., Østergaard, L., Fursted, K., Christensen, J. J., Rosenvinge, F., Køber, L., Tønder, N., Moser, C. & 2 flere, Iversen, K. & Bundgaard, H., 12 maj 2022, I: Heart (British Cardiac Society). 108, 11, s. 882-888 7 s.

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An Agreement of Antigen Tests on Oral Pharyngeal Swabs or Less Invasive Testing With Reverse Transcription Polymerase Chain Reaction for Detecting SARS-CoV-2 in Adults: Protocol for a Prospective Nationwide Observational Study

Schneider, U. V., Knudsen, J. D., Koch, A., Kirkby, N. S. & Lisby, J. G., 4 maj 2022, I: JMIR research protocols. 11, 5, s. e35706 e35706.

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Pseudomonas aeruginosa post-translational responses to elevated c-di-GMP levels

Bense, S., Witte, J., Preuße, M., Koska, M., Pezoldt, L., Dröge, A., Hartmann, O., Müsken, M., Schulze, J., Fiebig, T., Bähre, H., Felgner, S., Pich, A. & Häussler, S., maj 2022, I: Molecular Microbiology. 117, 5, s. 1213-1226 14 s.

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